HsaEX0066837 @ hg19
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035]
Coordinates
chr1:211499957-211529810:+
Coord C1 exon
chr1:211499957-211500231
Coord A exon
chr1:211527752-211527809
Coord C2 exon
chr1:211529709-211529810
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATTTTTTTCTCCAGAGA
3' ss Score
9.31
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGACGCACGTGAGGGAAATCAGATGACTGGACTTGTAGATACTAACGGTTCTGAAGCGGGTAGGTTAGCTTTCCAACCGCCTGGATGACGGTCTCAGCCTCCTCCCGACCCCTTCCTGCGCGTCCGCTCTTCCCCTGCGCCCGCCCGCGCCCCTCCGCCCGCGCCCCGGCCCCGCCCCAGGCCTCGCCTCCGCTTCGCCGCCGCCGCCGGCCGCAGCCAGGAGCAGCAGCCGCGCCTGCAGACCGGCCTCGCGGAGCCCGCGCGCCGAGCCCCAC
Seq A exon
AGAATTAAACACAGTGCCAATCTGCCCTGTAGATAAAGAGGTCATCAAATCTCAGGAG
Seq C2 exon
GTTTTTAAAGACAATTGTTGCAAAAGAGAAGTCCTCAACTTATATGTATATTGCAGCAATGCTCCTGGATGTAATGCCAAGGTTATTCTGGGCCGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512_MULTIEX1-3/11=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009720=zf-C3HC4=PD(25.6=50.0)
C2:
PF059116=DUF869=PU(4.5=26.5),PF086146=ATG16=PU(13.9=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCGCTCTTCCCCTGC
R:
ACTTCTCTTTTGCAACAATTGTCT
Band lengths:
187-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)