BtaEX6070736 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012020 | TRAF5
Description
Bos taurus TNF receptor-associated factor 5 (TRAF5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105340]
Coordinates
chr16:73909245-73912109:-
Coord C1 exon
chr16:73911891-73912109
Coord A exon
chr16:73911104-73911161
Coord C2 exon
chr16:73909245-73909346
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTTTGACTTTTCTTTACAGAGA
3' ss Score
9.12
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATGGCCTATTTTGAGGAGCAAGGAGGAGTGCCCTGTGGTTTCACCCGCCAGAATTCTGGCAACTCCATCTCCTTGGACTTCGAGCCCGACGCGGAGTACCAGTTTGTGGAGCGGTTGGAAGAGCGCTACAAGTGTGCCTTCTGCCACTCAGTGCTTCACAACCCCCACCAGACGGGCTGTGGGCACCGCTTCTGCCACCAGTGCATCCTGGCCCTGAG
Seq A exon
AGAATTGGACACAGTCCCACTCTGCCCTGTAGATAAGGAGGTGATCAAATCTCAGGAG
Seq C2 exon
GTGTTTAAAGATAATTGCTGCAAAAGGGAAGTCCTCAATTTGTATGTGTTTTGCAAAAATGCTCCCAGATGTAATGCCAAGATTATTCTGGGACGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012020-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(71.8=38.4)
A:
PF0009720=zf-C3HC4=PD(25.6=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGAAGAGCGCTACAAGT
R:
AGGACTTCCCTTTTGCAGCAA
Band lengths:
141-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]