GgaEX1060163 @ galGal4
Exon Skipping
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21613282-21616292:-
Coord C1 exon
chr3:21616071-21616292
Coord A exon
chr3:21614250-21614307
Coord C2 exon
chr3:21613282-21613383
Length
58 bp
Sequences
Splice sites
3' ss Seq
CAACTCTCCTTTTAATCTAGAGG
3' ss Score
5.37
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCTTCCATGGCCTGTGACGAGCTCACTGGTGTCTCGGGCATCTTTACGCGCCAAAACTCTGCTAGTGCTGTTTCTCTGGACTTCGAACCCGACACTGACTACAAGTTTGTGGAAACCTTAGAAGACCGGTACAAGTGTGCCTACTGCCATTCAGTCCTTCACAATCCCCACCAGACAGGATGTGGGCACCGATTTTGCCAGCAGTGCATTCTCACTTTGCG
Seq A exon
AGGACTGAATGCAGTACCCACCTGTCCTGTCGACAAAGAAACAATAAAAATGCACGAG
Seq C2 exon
GTATTCAAAGACAACTGTTGTAAAAGAGAAGTTCTCAACTTGTACGTGTTCTGCAAAAACCTGCCTGACTGCAATTCAAAAATAATTCTGGGGCGGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'6-6,'6-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139231=zf-C3HC4_2=PU(70.0=38.9)
A:
PF139231=zf-C3HC4_2=PD(27.5=55.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTTCACAATCCCCACCA
R:
GGCAGGTTTTTGCAGAACACG
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]