RnoEX0093220 @ rn6
Exon Skipping
Gene
ENSRNOG00000047957 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr13:110775481-110784209:-
Coord C1 exon
chr13:110783992-110784209
Coord A exon
chr13:110779919-110779974
Coord C2 exon
chr13:110775481-110775582
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTCCTTTCCAGAGAAT
3' ss Score
1.62
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGGCTCATTCAGAGGAGCAAGCGGTTGTGCCCTGTGCCTTCATCCGCCAGAACTCTGGCAACTCCATTTCCTTGGACTTTGAGCCCGACACAGAGTACCAATTTGTGGAGCAGCTGGAAGAACGCTACAAATGTGCCTTCTGCCACTCGGTGCTTCACAACCCCCACCAGACGGGCTGTGGGCACCGCTTCTGCCAGCACTGCATCCTGTCTCTGAG
Seq A exon
AATTGAACTCGGTGCCGATCTGCCCCGTAGACAAGGAGGTGATCAAGCCTCAGGAG
Seq C2 exon
GTGTTTAAAGACAACTGCTGCAAAAGAGAAGTTCTCAACTTACACGTCTACTGCAAAAACGCACCTGGATGCAATGCCAGGATTATTCTGGGACGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047957-'0-3,'0-2,1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(71.8=38.4)
A:
PF0009720=zf-C3HC4=PD(25.6=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACAACCCCCACCAGAC
R:
TTGCATCCAGGTGCGTTTTTG
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]