DreEX6100005 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38351559-38352909:+
Coord C1 exon
chr22:38351559-38351770
Coord A exon
chr22:38352669-38352726
Coord C2 exon
chr22:38352808-38352909
Length
58 bp
Sequences
Splice sites
3' ss Seq
GCAATCTTCCATGTTTTCAGTGA
3' ss Score
6.58
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTTGTATGGCTGCAGAGGAGAACGAGAGTTCTGGGCTCTCCAGACAGAACTCGGAGGCCTCGAGATCCTGGGATCTTGACAGCAGAACACTGCGCTTCGTGAGCCGGCTAGAGCAGCAGTTCATCTGCCCGTCCTGTGGGGGCATCGTCCTCAACCCTCACCAGACGGGCTGCGGGCACATCTTCTGTGCTCAGTGCGTGAAAGCATACAC
Seq A exon
TGAAAATGGGGGAAGTTCGAAATGCCCGTTAGACAGCATTCCTATAAAACCCGAGGAG
Seq C2 exon
ATCTTCCAAGACAACTGCTGTAAAAGGGAACTGCTGAACTTGGAGGTTTTCTGCACCAACGCGCCAGAATGCACTCAGAGGTTTTCTTTATGTAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(71.8=40.6)
A:
PF0009720=zf-C3HC4=PD(25.6=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATCTGCCCGTCCTGTG
R:
CCTCCAAGTTCAGCAGTTCCC
Band lengths:
139-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]