MmuEX6030113 @ mm9
Exon Skipping
Gene
ENSMUSG00000026637 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr1:193886523-193894516:-
Coord C1 exon
chr1:193894298-193894516
Coord A exon
chr1:193890775-193890832
Coord C2 exon
chr1:193886523-193886624
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGGTTTCCTTTCTAGAGA
3' ss Score
10.26
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AATGGCTCATTCGGAGGAGCAAGCGGCTGTCCCCTGCGCCTTCATCCGCCAGAACTCTGGCAACTCAATTTCCTTGGACTTTGAGCCCGACACCGAGTACCAGTTTGTGGAGCAGCTGGAAGAACGCTACAAATGTGCCTTCTGCCACTCCGTGCTTCACAACCCCCACCAGACCGGCTGCGGGCACCGCTTCTGCCAGCAGTGCATCCGGTCTCTGAG
Seq A exon
AGAATTGAACTCGGTGCCGATCTGCCCGGTAGACAAGGAGGTCATCAAGCCTCAGGAG
Seq C2 exon
GTGTTCAAAGACAACTGCTGCAAAAGAGAAGTTCTCAATTTACACGTCTACTGCAAAAACGCCCCCGGGTGCAATGCCAGGATTATTCTGGGACGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026637-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(71.8=38.4)
A:
PF0009720=zf-C3HC4=PD(25.6=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCACTCCGTGCTTC
R:
GGCGTTTTTGCAGTAGACGTG
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: