HsaEX0066836 @ hg38
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]
Coordinates
chr1:211326615-211356468:+
Coord C1 exon
chr1:211326615-211326673
Coord A exon
chr1:211353239-211353457
Coord C2 exon
chr1:211356367-211356468
Length
219 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCTGACCTCTGCAGAAT
3' ss Score
8.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGACGCACGTGAGGGAAATCAGATGACTGGACTTGTAGATACTAACGGTTCTGAAGCGG
Seq A exon
AATGGCTTATTCAGAAGAGCATAAAGGTATGCCCTGTGGTTTCATCCGCCAGAATTCCGGCAACTCCATTTCCTTGGACTTTGAGCCCAGTATAGAGTACCAGTTTGTGGAGCGGTTGGAAGAGCGCTACAAATGTGCCTTCTGCCACTCGGTGCTTCACAACCCCCACCAGACAGGATGTGGGCACCGCTTCTGCCAGCACTGCATCCTGTCCCTGAG
Seq C2 exon
GTTTTTAAAGACAATTGTTGCAAAAGAGAAGTCCTCAACTTATATGTATATTGCAGCAATGCTCCTGGATGTAATGCCAAGGTTATTCTGGGCCGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512_MULTIEX1-2/11=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009720=zf-C3HC4=PU(71.8=38.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACGTGAGGGAAATCAGAT
R:
GGTACCGGCCCAGAATAACCT
Band lengths:
156-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development