MmuEX6030112 @ mm10
Exon Skipping
Gene
ENSMUSG00000026637 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr1:192066894-192092559:-
Coord C1 exon
chr1:192092256-192092559
Coord A exon
chr1:192070417-192070635
Coord C2 exon
chr1:192066894-192066951
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGTCCCATCTGACTCCCCAGAAT
3' ss Score
8.45
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAAGCAGCCTAGTGCCCGCCGCCGTAGGGCGCCAGCGGAGCTCCGCGAGCCCCGCAAGTGGCGAAGTCCGGGTGAGCTAACCGTCCCGGCTCCTCAGAAACCGAAAGCAACTCAGGGTGGTGAGCCGGAGGCGTGTGTGGTAGCGGGCGAACTGAGGCGACGCGGGACACCCGCGCCCGGCCGAGGGCACTTTTGCAAGACTTGTGAGCACAGCCCGTTAACGTGAGCTTAATGCCAGGGTCTCGAGCCTGCGCCGGTGCTATAGCGCGTGCTCGATTGGAAACAGAACCCGACTCTGCAGAAG
Seq A exon
AATGGCTCATTCGGAGGAGCAAGCGGCTGTCCCCTGCGCCTTCATCCGCCAGAACTCTGGCAACTCAATTTCCTTGGACTTTGAGCCCGACACCGAGTACCAGTTTGTGGAGCAGCTGGAAGAACGCTACAAATGTGCCTTCTGCCACTCCGTGCTTCACAACCCCCACCAGACCGGCTGCGGGCACCGCTTCTGCCAGCAGTGCATCCGGTCTCTGAG
Seq C2 exon
AGAATTGAACTCGGTGCCGATCTGCCCGGTAGACAAGGAGGTCATCAAGCCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026637-'9-6,'9-5,13-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009720=zf-C3HC4=PU(71.8=38.4)
C2:
PF0009720=zf-C3HC4=PD(25.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGTCCGGGTGAGCTAAC
R:
TCCTGAGGCTTGATGACCTCC
Band lengths:
300-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types