DreEX6101030 @ danRer10
Exon Skipping
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8266822-8267314:+
Coord C1 exon
chr25:8266822-8266853
Coord A exon
chr25:8266950-8267124
Coord C2 exon
chr25:8267219-8267314
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCTTTTACACTGCAGTTT
3' ss Score
6.23
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
GATGCTTGGACTCATCTGGGAAACCACGTAGG
Seq A exon
TTTAATGAGAATTTTACGCACAACTGTGAGGACTGTGTCTGTGATAAGGCCAGGATGTCAGTCATCTGTGAACCCAAGAAGTGTCCCGATGTGCCCCCTGTGAACTGCACTGAGCCCTTCATGGTGGTCAATGTCACCGATCCATCAGAGCCATGCTGCAGCAGACAAGTTTGCA
Seq C2 exon
ATTGTAGCATGTGCCCATTTTCGGAGGAAAAGTGTGAGGTTGGATATGAACTGATTGTGCACCCTTACGGAGACTTCTGTCCAGAAATCAGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994-'28-32,'28-30,29-32=AN
Average complexity
A_C1
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(1.8=9.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGGACTCATCTGGGAAAC
R:
CGCATCTGATTTCTGGACAGA
Band lengths:
126-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]