MmuEX0030200 @ mm9
Exon Skipping
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148935637-148937828:+
Coord C1 exon
chr7:148935637-148935668
Coord A exon
chr7:148937253-148937430
Coord C2 exon
chr7:148937724-148937828
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTAATCTTTCCTCTTTGCAGTTT
3' ss Score
9.84
5' ss Seq
GTAGTAAGG
5' ss Score
3.38
Exon sequences
Seq C1 exon
GATGTGTGGGACCTGACAATGTGCCCAGAGAG
Seq A exon
TTTGGAGAGCACTTTGAGTTTGACTGCAAGGACTGTGTTTGCCGGGAGGGTGGAAGTGGCATTGTGTGCCAACCAAAGAAATGTTCTGGTGGCAACCAGACCACATGTGAGGAGGATGGCACCTACCTCGTTGTAGAGACCAACCCAGATGACAAGTGCTGCAATATCACCTCATGTA
Seq C2 exon
AGTGTGACACCAAACGATGCAAAGCTGAACGCCCCACATGTTTGTTGGGATTCGAAGTGAAGACCGAGATTGTGCCCGGGAAATGCTGTCCAGTTTATTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-'43-44,'43-43,44-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(1.8=9.1),PF0009313=VWC=PU(13.0=81.8)
A:
PF0009313=VWC=PD(84.1=96.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGTGGGACCTGACAATGT
R:
ATAAACTGGACAGCATTTCCCGG
Band lengths:
130-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: