RnoEX6005615 @ rn6
Exon Skipping
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214688129-214689783:+
Coord C1 exon
chr1:214688129-214688161
Coord A exon
chr1:214689672-214689736
Coord C2 exon
chr1:214689742-214689783
Length
65 bp
Sequences
Splice sites
3' ss Seq
CATAATCCTCTCTTTTGTAGTTT
3' ss Score
7.96
5' ss Seq
GTTCTGCCA
5' ss Score
-20.36
Exon sequences
Seq C1 exon
GATGTGTGGGGACCGGAAATGTGACCCAGAGAG
Seq A exon
TTTGGAGAGCACTTGAATTTGACTGCAAGGACTGTGTTTGCCTGGAGGGTGGAAGTGGTATTGTT
Seq C2 exon
AACCAAAAGAAGTGTGCTAGGGGCAACCTGACCACATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602-'63-65,'63-64,64-65=AN
Average complexity
A_C3
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAAATGTGACCCAGAGA
R:
CTCACATGTGGTCAGGTTGCC
Band lengths:
64-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]