HsaEX6000268 @ hg19
Exon Skipping
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1099764-1101662:+
Coord C1 exon
chr11:1099764-1099795
Coord A exon
chr11:1100994-1101171
Coord C2 exon
chr11:1101558-1101662
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTCTTTCCCTGCAGTTT
3' ss Score
12.03
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCTGTGTGGGACCTGACAATGTGCCCAGAGAG
Seq A exon
TTTGGGGAGCACTTCGAGTTCGACTGCAAGAACTGTGTCTGCCTGGAGGGTGGAAGTGGCATCATCTGCCAACCCAAGAGGTGCAGCCAGAAGCCCGTTACCCACTGCGTGGAAGACGGCACCTACCTCGCCACGGAGGTCAACCCTGCCGACACCTGCTGCAACATTACCGTCTGCA
Seq C2 exon
AGTGCAACACCAGCCTGTGCAAAGAGAAGCCCTCCGTGTGCCCGCTGGGATTCGAAGTGAAGAGCAAGATGGTGCCTGGAAGGTGCTGTCCTTTCTACTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(1.8=9.1),PF0009313=VWC=PU(13.0=81.8)
A:
PF0009313=VWC=PD(84.1=96.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTGGGACCTGACAATG
R:
ACCAGTAGAAAGGACAGCACCT
Band lengths:
134-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)