GgaEX1001649 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr5:14300187-14301363:-
Coord C1 exon
chr5:14301332-14301363
Coord A exon
chr5:14300998-14301175
Coord C2 exon
chr5:14300187-14300291
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTTAATGACAGTTT
3' ss Score
6.8
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCTGTGTTGGATTGGATATGATACCAAGAGAG
Seq A exon
TTTGGAGAAAAGTTCACAGCAGACTGTCAGGACTGTGTTTGCCTGGAAGGTGGAAATGGCATTGTATGTGAACCTCACAAATGTCCTGAACAAAATAAGAAGAGTTGTTCTGGGAAAGGCTTCTATGAAGTCACTGTAGTCAACTCTGAAGATCCCTGCTGCCCCACTGTCACTTGCA
Seq C2 exon
AATGCAACACAAGTTTGTGCACAACTGAACCCCCCAAGTGTACACTGGGATTTGAAGTTTTTTCTTATATTCCCAGTGATGAGTGCTGTCCTGTGTACAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744-'56-62,'56-61,57-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(1.8=9.1),PF0009313=VWC=PU(13.0=81.8)
A:
PF0009313=VWC=PD(84.1=96.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTGGATTGGATATGATACC
R:
ACACTTGTACACAGGACAGCAC
Band lengths:
136-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]