DreEX6101253 @ danRer10
Exon Skipping
Gene
ENSDARG00000006921 | lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
Coordinates
chr25:10639071-10672001:-
Coord C1 exon
chr25:10671799-10672001
Coord A exon
chr25:10643326-10643526
Coord C2 exon
chr25:10639071-10639290
Length
201 bp
Sequences
Splice sites
3' ss Seq
CAATATTATTTGTTGGACAGGGT
3' ss Score
3.72
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
CTCGTGCCTCCTCTACTATCGCTAGAAAAGTCGCTCGGGCGAAAAAAAGTCCGATTGATCGACCTACGGACTAACAAACTTTCTCCTAACACCAATACCTCGAAGAAATGGAGCTGGGATTATGGAATTAAAGCCCGGAGCGCTTGCGATGGAGATTTTATTGCTGGAACTGCTGCTTTGTTGTAGTCTGACGGTGATTCGCG
Seq A exon
GGTCTCCTTTGCTGCTTTTCGCCAACCGGCGGGATGTCCGGCTGGTGGACGTGGAGGTGGGTCGCTCAGAGTCTGCAGTGGTGGTCAGTGATCTGGAGGACGCGGCCGCAGTGGACTTTCTCTTCTCGGAGGGCCTGATTTTCTGGACAGACGTCAGCGAGGAGGCCATCAAACAGACCTACTACAACCTCTCTACAAACT
Seq C2 exon
CTATGAAGGAGGCCACGCTGGGCAAAGGGCAGACGGTGGTGGTTTCAGGTCTGGATTCCCCCGATGGCTTGGCCTGCGACTGGCTGGGACACAAACTCTACTGGACTGACTCGGAGACAAACCGCATCGAAGTGGCCAATTTGGACGGCACCTCCCGAAAGGTGCTCTTCTGGCAAGATCTGGACCAGCCCAGAGCGATTGCACTAAACCCCTCTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006921-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(45.1=33.8)
C2:
PF0005812=Ldl_recept_b=PD(52.9=36.5),PF0005812=Ldl_recept_b=WD(100=55.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCCTCCTCTACTATCGC
R:
GAGTTTGTGTCCCAGCCAGTC
Band lengths:
300-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]