RnoEX0050741 @ rn6
Exon Skipping
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218883039-218920094:-
Coord C1 exon
chr1:218919924-218920094
Coord A exon
chr1:218891812-218892208
Coord C2 exon
chr1:218883039-218883236
Length
397 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTGCTCTGCCCTCAGCCT
3' ss Score
7.54
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
CGGGAGCCGCGAGGGTCCACCGCCGCCGCGCGCGCCATGGAGCCCGAGTGAGCGCGCGGCGCTCCCGGCCGCCGGACGACATGGAAACGGCGCCGACCCGGGCCCCTCCGCCGCCGCCGCAGCCGCTGTTGCTGCTGCTGGCGCTGTGCTGCAGCCTAGTCCCCGCTGCGG
Seq A exon
CCTCACCACTCCTGTTGTTTGCCAACCGCCGGGATGTACGACTAGTGGATGCTGGTGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGTCTGGAGGACGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCTGGCCTTGTATCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCAGAGACCAACCGCATCGAGGTGGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG
Seq C2 exon
GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATTGATCTGGAGGAGCAGAAGCTGTACTGGGCTGATGCCAAACTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911-'0-2,'0-0,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=32.3),PF0005812=Ldl_recept_b=WD(100=30.8)
C2:
PF0005812=Ldl_recept_b=WD(100=62.7),PF0005812=Ldl_recept_b=PU(56.4=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGCCCGAGTGAGC
R:
GGAAGGAGCCGTCCAGGTT
Band lengths:
334-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]