DreEX6102143 @ danRer10
Exon Skipping
Gene
ENSDARG00000045799 | acanb
Description
aggrecan b [Source:ZFIN;Acc:ZDB-GENE-100422-16]
Coordinates
chr25:19121203-19122131:-
Coord C1 exon
chr25:19121739-19122131
Coord A exon
chr25:19121463-19121637
Coord C2 exon
chr25:19121203-19121330
Length
175 bp
Sequences
Splice sites
3' ss Seq
AATGGCTCAAATCTTTACAGGCA
3' ss Score
7.02
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCAAGACAGCACCCTCAGTGTGAGCATCCCTGTGGAACAGCCATTGCGTCCCCTACTTGGGGGGAGCATGGTTATCCCCTGCTACTTTCAGGACATCACCCTCCAGGACCCTGGCACCCTGACCTCCCCTACCAATGCCCCATTGTCCCAGCGCATTAAATGGAGTCATATCCACAAGGGCAAAATATCCCTTATACTGGTTGCCACTGAGGGTCAGGTGCAGGTTGAGACAGAGTACTTGGACAGGGTTCATCTGGTAAACTACCCCATGGTGCCAAGTGATGCTACCATTGAAATCTCAGAACTCCGTTCCCATGATTCTGGCACCTACCGATGTGAGGTCATGCAGGGGATTGACGATAACTATGATTCGGTGGAAATGCAAATACAAG
Seq A exon
GCATTGTATTTCACTACCGAGCAATTTCTACCCGATACACATTAACCTTTGAAATGGCAAAAGCAGCCTGCATTCAGAACAGTGCTGTTATCGCAACTCCAGCACAGTTGCAAGCTGCCTATGATGATGGATTCCATCAGTGTGATGCTGGCTGGCTTTCAGACCAAACCGTGAG
Seq C2 exon
ATATCCTATCCATGAACCAAGGGAGCCTTGTTATGGAGACAAAGATAATTTCCCAGGTGTTCGAACATATGGAGTCCGAGACGTCAATGAAACCTATGATGTGTACTGTTTTGCAGAGAAAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045799-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PU(93.0=95.2),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0768612=V-set=PD(4.7=3.4),PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGACAGGGTTCATCTGGT
R:
TCATTGACGTCTCGGACTCCA
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]