MmuEX6011622 @ mm10
Exon Skipping
Gene
ENSMUSG00000030607 | Acan
Description
aggrecan [Source:MGI Symbol;Acc:MGI:99602]
Coordinates
chr7:79084467-79088305:+
Coord C1 exon
chr7:79084467-79084850
Coord A exon
chr7:79086262-79086436
Coord C2 exon
chr7:79088178-79088305
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCATGTGTCCCACAGGTA
3' ss Score
10.25
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACCATGACAACTCACTGAGCGTGAGCATCCCTCAACCATCCCCATTGAAGGTCCTCCTAGGGTCTTCCCTCACCATCCCCTGCTACTTCATCGACCCCATGCATCCTGTGACCACTGCCCCCTCCACTGCCCCCCTCACCCCAAGAATCAAGTGGAGCCGTGTTTCCAAGGAAAAGGAGGTGGTACTGCTGGTGGCCACTGAAGGACAGGTTCGAGTCAACAGCATCTACCAAGACAAGGTGTCGCTCCCCAACTATCCAGCCATCCCCAGCGATGCTACCTTGGAGATCCAGAACCTTCGCTCCAATGACTCTGGGATCTACCGCTGTGAAGTGATGCACGGCATCGAGGACAGCGAAGCCACCCTGGAGGTCATAGTGAAAG
Seq A exon
GTATTGTGTTCCACTACAGAGCTATTTCCACACGCTACACCCTGGACTTTGATCGAGCACAGCGGGCTTGCCTACAGAACAGCGCCATCATCGCCACCCCAGAACAACTGCAGGCTGCCTATGAGGATGGCTTCCACCAGTGCGATGCAGGCTGGCTGGCTGACCAGACAGTCAG
Seq C2 exon
ATACCCCATCCACACGCCCCGGGAAGGTTGCTATGGTGACAAGGACGAGTTCCCTGGAGTGAGAACCTACGGAATCCGGGACACCAATGAGACCTATGATGTGTACTGCTTCGCTGAGGAGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030607-'1-13,'1-2,4-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.6),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGGTGGTACTGCTGGT
R:
GTCACCATAGCAACCTTCCCG
Band lengths:
252-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types