RnoEX6003373 @ rn6
Exon Skipping
Gene
ENSRNOG00000028992 | Acan
Description
aggrecan [Source:RGD Symbol;Acc:68358]
Coordinates
chr1:140794427-140798301:+
Coord C1 exon
chr1:140794427-140794810
Coord A exon
chr1:140796193-140796367
Coord C2 exon
chr1:140798174-140798301
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCATGTGTCCTACAGGCA
3' ss Score
8.65
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACCATGACAACTCACTGAGTGTGAGCATCCCTCAACCATCCCCACTGAAGGCCCTCCTAGGGACTTCCCTCACCATCCCCTGCTACTTCATCGACCCCATGCATCCTGTGACCACTGCTCCCTCCACTGCCCCCCTCACCCCAAGAATCAAGTGGAGCCGTGTTTCCAAGGAAAAGGAGGTGGTACTGTTGGTGGCCACTGAAGGACAGGTTCGAGTGAACAGCATCTACCAAGACAAGGTGTCACTTCCCAACTATCCAGCCATCCCCAGCGATGCCACCTTGGAAATCCAGAACCTTCGCTCCAATGACTCTGGGATCTATCGGTGTGAAGTGATGCATGGCATTGAGGACAGCGAAGCCACCCTGGAGGTCATAGTAAAAG
Seq A exon
GCATTGTGTTCCACTACAGAGCTATTTCCACACGCTACACACTGGACTTTGACCGAGCCCAGCGGGCTTGCCTTCAGAACAGCGCCATCATCGCCACCCCTGAGCAACTGCAGGCCGCCTATGAGGATGGCTTCCACCAGTGTGATGCAGGCTGGCTGGCTGATCAGACAGTCAG
Seq C2 exon
ATACCCCATCCACACTCCCCGGGAAGGTTGCTATGGTGACAAGGACGAGTTCCCTGGAGTGAGGACCTATGGAATCCGAGACACCAACGAGACCTATGATGTGTACTGCTTCGCTGAAGAGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028992-'2-4,'2-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.6),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTGGTACTGTTGGTGG
R:
GTCACCATAGCAACCTTCCCG
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]