GgaEX6008099 @ galGal3
Exon Skipping
Gene
ENSGALG00000006725 | ACAN
Description
NA
Coordinates
chr10:14757783-14759389:-
Coord C1 exon
chr10:14759018-14759389
Coord A exon
chr10:14758173-14758347
Coord C2 exon
chr10:14757783-14757910
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATGGCCATTGTGTTTTCCAGGCG
3' ss Score
7.92
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACAGTAGCGATGGCCTGGAAGTGAAGATACCTGAGCAGTCTCCCCTGCGTGTTGTCCTGGGAAGCTCCCTGAACATCCCCTGCTATTTCAACATCCCAGAGGAAGAGGACACCAATGCTCTGCTGACCCCCCGGATCAAATGGAGCAAGCTTTCCAATGGAACAGAGATTGTCTTACTAGTGGCCACCGGTGGGAAGATCCGGCTCAATGCAGAGTACAGAGAGGTGATCTCCTTGCCCAATTACCCTGCCATCCCCACTGATGCCACCTTGGAAATCAAGGCGCTGAGATCCAACCACACTGGGATTTATCGCTGTGAAGTGATGTATGGGATTGAGGACAGACAAGACACCATAGAGGTCCTGGTGAAAG
Seq A exon
GCGTCGTGTTCCACTACAGAGCAATCTCCACAAGGTACACTTTGAACTTCGAGAGGGCAAAGCAGGCCTGTATCCAGAACAGTGCTGTCATTGCCACCCCTGAGCAGCTGCAGGCTGCCTACGAGGATGGGTACGAGCAGTGCGATGCCGGCTGGCTGGCTGATCAGACTGTCAG
Seq C2 exon
GTACCCCATCCATCTGCCCCGGGAGCGCTGCTACGGTGACAAGGATGAGTTTCCAGGAGTGAGAACCTACGGTGTCCGTGAGACAGATGAAACCTATGATGTTTACTGCTATGCAGAGCAAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006725-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=95.2),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACTAGTGGCCACCGGTG
R:
CATCCTTGTCACCGTAGCAGC
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]