DreEX6102969 @ danRer10
Exon Skipping
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:28987560-28994714:-
Coord C1 exon
chr25:28994656-28994714
Coord A exon
chr25:28987736-28987784
Coord C2 exon
chr25:28987560-28987655
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTTCCTCACTCTAGCTA
3' ss Score
8.25
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GATAACTTTCCTTTTGATCCTCCCTTCGTACGGGTTGTGTCTCCTGTCCTGTCTGGAGG
Seq A exon
CTATGTTCTTGGAGGAGGAGCCTTGTGCATGGAGCTTCTTACAAAACAG
Seq C2 exon
GGCTGGAGCAGTGCCTACTCAATAGAGTCAGTCATCATGCAAATCAATGCCACCTTAGTCAAAGGGAAAGCCAGAGTGCAGTTCGGAGCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.2=100)
A:
PF0017921=UQ_con=FE(10.3=100)
C2:
PF0017921=UQ_con=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCTCCCTTCGTACGGG
R:
TTTGCTCCGAACTGCACTCTG
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]