GgaEX1061645 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3002112-3003796:-
Coord C1 exon
chr10:3003738-3003796
Coord A exon
chr10:3002409-3002457
Coord C2 exon
chr10:3002112-3002207
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTTCTCACATTTATTTCTAGATA
3' ss Score
8.38
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATAACTTCCCGTTTGATCCTCCCTTTGTGCGAGTAGTATCTCCTGTGCTCACAGGAGG
Seq A exon
ATATGTCCTAGGTGGAGGTGCATTATGCATGGAACTTCTTACCAAACAG
Seq C2 exon
GGCTGGAGCAGTGCCTATTCAATAGAATCAGTCATCATGCAGATCAATGCCACTTTAGTCAAAGGAAAAGCCAGAGTTCAGTTTGGAGCCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.2=100)
A:
PF0017921=UQ_con=FE(10.3=100)
C2:
PF0017921=UQ_con=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCGTTTGATCCTCCCT
R:
GCTCCAAACTGAACTCTGGCT
Band lengths:
144-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]