GgaEX1061645 @ galGal3
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
NA
Coordinates
chr10:4443981-4445665:-
Coord C1 exon
chr10:4445607-4445665
Coord A exon
chr10:4444278-4444326
Coord C2 exon
chr10:4443981-4444076
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTTCTCACATTTATTTCTAGATA
3' ss Score
8.38
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATAACTTCCCGTTTGATCCTCCCTTTGTGCGAGTAGTATCTCCTGTGCTCACAGGAGG
Seq A exon
ATATGTCCTAGGTGGAGGTGCATTATGCATGGAACTTCTTACCAAACAG
Seq C2 exon
GGCTGGAGCAGTGCCTATTCAATAGAATCAGTCATCATGCAGATCAATGCCACTTTAGTCAAAGGAAAAGCCAGAGTTCAGTTTGGAGCCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.2=100)
A:
PF0017921=UQ_con=FE(10.3=100)
C2:
PF0017921=UQ_con=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCGTTTGATCCTCCCT
R:
GCTCCAAACTGAACTCTGGCT
Band lengths:
144-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]