HsaEX0068785 @ hg19
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76175707-76183355:+
Coord C1 exon
chr15:76175707-76175765
Coord A exon
chr15:76182776-76182824
Coord C2 exon
chr15:76183260-76183355
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTTTTTCTTTTTAAGGTA
3' ss Score
12.83
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
Seq A exon
GTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCTCACAAAACAG
Seq C2 exon
GGCTGGAGCAGTGCCTACTCAATAGAATCGGTCATCATGCAAATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'14-18,'14-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.2=100)
A:
PF0017921=UQ_con=FE(10.3=100)
C2:
PF0017921=UQ_con=FE(19.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATTTGTTCGAGTGGTGT
R:
TTGCTCCAAACTGCACTCTGG
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)