DreINT0000012 @ danRer10
Intron Retention
Gene
ENSDARG00000008835 | A2ML1 (1 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3654716-3654929:-
Coord C1 exon
chr3:3654878-3654929
Coord A exon
chr3:3654800-3654877
Coord C2 exon
chr3:3654716-3654799
Length
78 bp
Sequences
Splice sites
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
3' ss Seq
TTTAGCTATTTGGTTTACAGGAA
3' ss Score
7.77
Exon sequences
Seq C1 exon
GCTGAAGGTGTGGAAAGGACCTTCATCCGAAGTTGGTTACTCTGTCCAAAGG
Seq A exon
GTTAGTTTGATTTTTAAAGTTTACTCAACTGCTAGAGATCCTAGTGATATCTGCTGATTTTAGCTATTTGGTTTACAG
Seq C2 exon
GAACCACGCTGTCAGAAGTAGTGAAGATCACATTTCCAACAAATGTCATCCAAGGATCTGCCAAATGCTCCGTATCAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008835:ENSDART00000021286:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGGTGTGGAAAGGACC
R:
CAATGACTGATACGGAGCATTTGG
Band lengths:
136-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]