DreINT0000256 @ danRer10
Intron Retention
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61858931-61860967:+
Coord C1 exon
chr5:61858931-61859071
Coord A exon
chr5:61859072-61860845
Coord C2 exon
chr5:61860846-61860967
Length
1774 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
GGTGTTTTTGTCTCCGTCAGGCT
3' ss Score
6.53
Exon sequences
Seq C1 exon
GACCTGTTGAAGCACACTCCTAAGGATCATCCCGATTTCCCCTTACTGCAGGACGCTCTGAGAATATCCCAGAACTTCCTGTCCAGCATCAATGAAGAGATCGACCCACGCAGGACTGCCGTGACCACACCAAAGGGAGAG
Seq A exon
GTGCGACTGTGTTTATGAATGAAGTCTGTTTAAGGCAGACAGTTCCTTTATAAGAATAACTTCACAACTTCTTTATTAATAGCATTTGTTTCAGAACCTGTTTTTATGTGTAAGCATTTATAAACTCAACAGTCACACTTATTTAACACCAAAACTATCAGACCAAGAGTTTGATTTCAGTCAGTTAAAAATAACTTTTTATAACTTGAATGACATTTAAAGGTCCAGGACACCCTGGAGAACCTTTTTTTTATATTAACAGATGTGTGTGTGTTGAGCATCAGTTAAGACAATGTTAGCACCTGTCAGCTTTAATTGTGGGGAAAACTGGATAATTTTGAGCTTTTGTCAACTAATTTCAGCTTCCGGGTTTAAAATGATTTTTGGGGCGGGATCAAAATCGGCGACGTAGCGAAGTACCGCAAGTGCAATGATGACGCGTCGGTTTCTCATTATTATTCATAGCGGAGTTTTCTTATCCTATGAGAAGAGCCTGCTGCTTAATTATTCATGAGAGCACATGCTTTCTGAAGGCAAGGCCGACCTGCCAGCTTCAAGCAAGCTGTGAGACACGGACCCACCAACGGCACGCAGTAGCCGTTCATGAAGGCTCGTATGTGTTTGTTTCCATGATCCACGGGGTTTGTTGCATGTTTTGTCCCCACCATCTTGTCAGGGCCGATCATACAGCAATGCTGTGTGTGTGCTGCAAGCATTTTTGTCGGGAGAGCAGTACGAGAATTGAAGAATGGCGGATGTTGACTTATCAGGAGTTAGTTCACATTCAGACACATCGTCGTGCTGCTGTGTTTGCCTAAATCCTCTATATTACCAGCAGGGCTAATGGTTAAAATAGGCAGGTCAGGAGACCTGCTGCACGAGTCTGCATTCAGATCTATAATATAGACTTGGGGATCGAGGAAGAAGCCTCATTTATAGTGTTTATATGAACACACTTATCTTTATAATGATATAAATTGTGGATATGTGTATATGAAATTACGAATAACAAATGTAGCAGGGCATTAAATAACTGTTTATTTCGTTGCATTTTAACTTTGTGAACTATAAACTCATGCGTCTCCTCACGGTTTGTGTCTCATTTTGTGAGCAAACTGTCAACAACAGTCGTTCGCTCCCCTTCTCCCCTGCTGGCCACGCCCACTCCTGCCCTATGCTTGCGGAGCTCCACGCCCATTAATCATGCATCTTTTGAAAAAATTCTGAAGTAGACTTTAACCGAAAGTGGGGGGTGTCATGGCCCTTTAACAATGTTTAAAGGAAAAGTTCACCCAAAAATAAACAAAGAACAGAACAAACACTATTTACTTGTTCCAAACTGTTTCTGGAGCCCAACTTTTTTACAGTGCATATGGGAGTTGCATCAGCCATATTGTCACCTTAAAATGATAAGGTTCTATCTGACATTTTTGTCAAAATGGAGTTATTGACATATTCTTATTAAATGACAACTTGTTTACATTATGGCATGTTATTTTAATAGGTTGTTTACATTTTAAGACTTTTTATTTAAAAGTGTTACACGCACACTGCTTGATATATGGAATCCAAAAACTTTGAAGCTCAGTATCTCAAAATCATACAAATCTGTACATCAGCACAATCTCCACCTCGCTTTCATTCATCCCCTTTATTTGAACTAAAATAGTTTTTCGACCGACCACAACAGTGTCTATGATCATTTAACCTTTGCCGCCTGATGGCTCTGTTGAGTCCACAGGAAGTAAAAAGTGGGTGTTTTTGTCTCCGTCAG
Seq C2 exon
GCTCGTCAGCTGGTGAAGGACGGCTTCCTGGTGGAGGTGTCGGAGGGAACGCGTAAACTCCGTCATGTCTTCCTCTTCACAGACCTTCTGCTCTGCGCCAAGATGAAAAAGACCGCAGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587:ENSDART00000082965:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0)
A:
NA
C2:
PF0016924=PH=PU(23.3=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTTGAAGCACACTCCT
R:
CCAACTGCGGTCTTTTTCATCT
Band lengths:
263-2037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]