RnoINT0011434 @ rn6
Intron Retention
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64609295-64611960:-
Coord C1 exon
chr10:64611820-64611960
Coord A exon
chr10:64609417-64611819
Coord C2 exon
chr10:64609295-64609416
Length
2403 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGGGGTGCTCTCTCCCTCAGACT
3' ss Score
8.15
Exon sequences
Seq C1 exon
GATCTGTTGAAGCACACACCTGTGGACCACCCCGACTACCCACTGCTTCAGGATGCCCTTCGAATCTCCCAGAATTTTCTATCTAGCATTAATGAGGATATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGGGAG
Seq A exon
GTGAGTTCAAGGCTTTCACAGTTTCACACCTAGACTAGGAGTAAACAGTTGGCCAGATCCCTTGTCCCTGCTGTCCTTGGCCACCCTGATTAACTATAGCTTGTTGGGTCCTAGGTTAAGAACGTTATGACTGGCTAGGCAGTGGTGGTGCACACCTTTAATCCCAACACTCAGGAGGCAGAGGCAGGAGAATCTCCATGAGTTCAAATCCAGCTTGATCTATAGAGCACATTGCAGGGCAAGGCTACACAGAGAAACTCTGTCTTGAAAAAGCTAACTTCCCTTACCCCCACCTCCACCCCCCAAAAAAGAATTTGAAGACTATTGTCTCTGACTGGGGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATTTGTTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGGCTCACAACCATTTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGATAGCTATAATATACTCATGTACATAAAACAAATAAATAAATCTCTTAAAAAAAAAAAAAAAAAGACTGTTGTCTCCTAGGTCCCTATAATAACCTGTTAAGACAATCTCTGAGCCTGGTACAGGGATCCCCAGATAAAAGTGTCAAAACTAGAAAAAAAAAAAAAAGACTGTTGTCTCCTAGGTCCCTATAATAACCTGTTAAGACAATCTCTGAGCCTGGTACAGGGATCCCCAGATAAAAGTGTCAAAACTAGATTCTTTTTTTTTTTTTTTTTTTCTTTTTCTGGTTCTTTTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCAAAACTAGATTCTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCAAGGCAAACGCTCTACCACTGAGCTAAATCCCCAACCCCCAAAACTAGATTCTTAACTGACTGTCAAACTCCACACATTTCTCCCACCAGGAGCTGGACCTTCATAGAGCTCATTCTTGGTCCACATCCTTGCTCTGATTGGGATGATACTCTCTGGGAGCCCCAGTAGACACTTAATGAACACAGTGGGTAGGCTAGAGCTAGGCGACAAGCCCAACCACAGAGAATGCTAGTACTGGACATGGTTTAGCCACCCAGGCTGATGATATGTCCTCGGAAACACCCAGATGTGACATTGCATCTCCCCTGGGGTGGGGTGAAAAGCTTCCTGACGAAAGAGTGGGAAAGCAGTGTGACCAACTGGGGAGACTGTGACCCTCAGTGGTCAACAGACTGGCCCAGATACAGTGCCTTTAGTCTAATTGAGGTAATTAAGTAGCATTTAGGAGAGAAGGCTGACTGGGTTTATGCTCCTTTGTTTCATTTATGAGTCTCCGATGTCTGCTGGGAGAGGAAGTAATGAGGGACAGGGTCTGGAGCATGGCTAATGGGGCATGAGCTGTCTGTACGCAGTTTCCAGCCCTGCCCTGCAACATCCCAGAAAATGGCACCAGTGCATTTTACTCAGGATATCTGGGGGAAAAAAAATCTCTAGAAGTCAGAGAGCGCTATCAGTTTCGGGTTGTATAAATCATATCCTTTCCACAAGCTCACCCACAGACAATAGTGTATGTAGGTCACACAGCGTATCGCGCACACAGAGAAGGCTGGACTAGCTGGCGACAGCTCTGAAGAAGCCCACTAGCTCTGAGGGTTGCAGGGAGGAAGCGACTCGTGTCTCACGAGCACTGAGATGCTTCTCACTGTCCCCACCACTATAGCTCCCCTTGGGGAAACCCCAGGGCTTTCAACCATAGTTGAAGAATCCATGGAGAAGGGAGCATGGGCAAGCCTGAGTGGGTTGGCTGAGCAAGATGAGCTGAAACTAGATCAAACTCTCTGATGGGAGGGGATGTGAGATTGGAGGTGTTCATGGCCAAGGGTGGAGAAACCAAGTCGCTGCAGAAAGTTTTTCTTAATCCAGGGGAAGCTGCTGAGCGCTGTGGGGAAGGGTGCCCCTACTGTCTGTGAATTGCGCTGTGCAGTTCCACGTTGAGTACTGCTTCATGAGACAGACACCATTCTCTTAGCCACTCAGACAATAGGTCTGAGAGGAGAGGAGAGTACAGCTGAGAAAGGGCTGAATCTGGAGTCCAACCAAAGCCAATGCAGGCCGGGCCCTGAAGCTCTCCTCCCTCTGAGCAGGTGGGGGGTGCTCTCTCCCTCAG
Seq C2 exon
ACTCGGCAGCTGGTGAAGGACGGCTTCCTGGTGGAAATGTCTGAGAGCTCCCGGAAGCTGCGGCACGTCTTTCTCTTCACAGATGTTCTACTGTGTGCCAAGCTAAAGAAGACCTCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837:ENSRNOT00000080703:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0)
A:
NA
C2:
PF0016924=PH=PU(23.4=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]