GgaINT0132808 @ galGal3
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
NA
Coordinates
chr19:6272110-6272571:+
Coord C1 exon
chr19:6272110-6272250
Coord A exon
chr19:6272251-6272449
Coord C2 exon
chr19:6272450-6272571
Length
199 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACCCACTGTGCTCCCTGCAGACC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GACCTCCTCAAGCACACCCCGTCTGACCACCCCGACTACCCACTGCTGCAGGACGCCCTCCGCATCTCACAGAACTTCCTCTCCAGCATCAATGAGGACATCGATCCTCGGAGGACAGCGGTCACCACTCCCAAGGGGGAG
Seq A exon
GTGAGACAGGCAGGGTGGCGCAGGGGGGTGGTTGAGCCCTCGTCCTTTCTGCTTGCTGGAACCCTACTGACATTCAGGGAGACAAAACGGTACCCAGGGGATGTGGACCTGTGGGATGAGACATGGGGAGGGACGGGGGTGCCTGTATGTGCCACCCTATGGTCTTTTCCCTCTCTGACACCCACTGTGCTCCCTGCAG
Seq C2 exon
ACCCGGCAGCTCATCAAGGATGGTTTCTTGGTGGAGCTGTCAGAGGGCTCCCGGAAGCTGCGGCACGTCTTCCTCTTCACCGACGTGCTGCTCTGTGCCAAGCTGAAGAAGACAGCGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.1=66.0)
A:
NA
C2:
PF0016924=PH=PU(23.1=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCACACCCCGTCTGAC
R:
TTCTTCAGCTTGGCACAGAGC
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]