MmuINT0009183 @ mm10
Intron Retention
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76461293-76463668:-
Coord C1 exon
chr11:76463528-76463668
Coord A exon
chr11:76461415-76463527
Coord C2 exon
chr11:76461293-76461414
Length
2113 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTCTCTCTCTCTCCCTCAGACT
3' ss Score
12.19
Exon sequences
Seq C1 exon
GATCTGTTGAAGCACACACCCGTGGACCACCCGGACTACCCGCTGCTTCAGGATGCTCTCCGCATCTCCCAGAATTTCCTGTCTAGCATTAACGAGGACATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGAGAG
Seq A exon
GTGAGTTCAGGGCCCTGCATAGCTTCACAACTAGACTGAGGAATAGACAGTCGGCCAGGTCCCTTGTCCCTGCTGTCCTTGGCCACCCTGATTGGCTATAGCATGTCAGGTTCTAGGTTAAGAACTTTATGACTGGCTGGGCAGTGGTAGTGCACACCTTTAATCCCAGTACTCCAGAGGCAGAGGCAGGAGGATCTCTATAAGTTTGAGGCCAGCCTGATCTACAGAGCAAGTTCCAGGCCCAGGCTACACAGAGAAACCCTGTCTCGAAAAAACCAATTCCCTTCTCCCCCGCAAAAAGAACTTTAAGACTGTTGTCTCATAGGTCTCTATAATAACCTGTTAAAATAATCTCTGAGCCTGGCACAGGGATCCCCAGATAAAAGTGTCAAAACTAGATTCTTAACTGGACTGTCAAACTAAACACGTTGCCCCCCCACTAGAAGCTGGACTTCTGGGGACCTCATTCTTGGTACACATCCTTGCTGCGATTGGGATGATGCTCTCTGGGAGCCCCTAGGAGACATTTAGGGAACATACTTGGTGGTCCAGGGCTAGGCAACGAGCCCAACAACAGAAAGCGCTAGTACTGGACATGGTTAGTGCTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGACATGGTTAGTGCTGGGCATGGTTAGTGCTGGACATGGTTAGTACTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGGCATGGTTAGTATTGGACATGGCTAGTACTGGACATGGTTAGTGCTGGGCATGGTTAGTACTGGACATGGTTAGTGCTGGGCATGGTTAGTACTGGACATGGTTAGTACTGGACATGGTTAGTGTTGGGCATGGTTAGTACTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGGCATGGTTAGTGCTGGACTTGGTTAGTGCTGGACATGGTTAGTACTGGACATGGTCTAAGCCACCCAGGCTGACGATATGTCCTCGGAAACACCTAGATGTGGCATTGCGTCTCCCCTGGGGTGGGAAGCTTCCTAATGGAAGAGTGGGAAAGCAGTGCGAGGAACTGGGGAGACGGTGACCCTCAGTGGTCAACAGACTGGCCCAGATACAGTGCCTTTAGTCTAATTGAGCTAATTAAGTAGCATTTAGGGGGAAGGCTGACTGGGTTTCTGCTCCTTTGTTTCATTTATGAGTCTTCCACGTCCACTGGGAAAGGCAGTAATGAGGGACAGGGTCTGGAGCACGGCTAATGGGGTGTGGAGCTGTCTGTACGCAGTTCCCGGCCCTGGCTTGCAGCATCCCAGAAAATGGCACTAGTTGGTTTTACTCTGAGGATATCTGAAAAAAAAATCTCTAGAAGGCATAGAGCGCTATCAGTTTCAGGTTGTCTAACTCATACCCTTTCGTCATGCTCACCCACAGACGATAGTGTATGTAGGTCACACAGTGTTTCATGCACACAGGGAAGGCTGGAATAGATGGTGACAGCTCTGGAGAAGCCCACTAGCTCTGAGGGTGGCAGGGAGGAAACGATACATGTCTCATGAGCACCAAAATGTTTCTGACTGTCCCAATCGCTATAGCTCCCCTTGGGGAAATCCCAGTGTCTTTCATCCGTAGTTGAAGAATCCACTGAGAAGGTAGCATGGGTGAGCCTGAGTGGGTTGGCTGAGCAAGACAAGCTGAAACTAGATCAAACTCTCCATTGGGAGGAGATGTGAGATTGGAGGTGTTCATGGCCAAGGATGGAGAAACCAAGCTATTCCAGAGAGTTTTTATTAATCCAGGGGACACTGCTGAGAGCTGTGGGGAAGGGTGCCCCTTCTGGCTGTCAGTCACATATGGGGTGCCCCTCCACTGTGCTATTCCACACTGAGTACTGCTTCACGAGACAGACGCCATTCTCTTAGCTGCACAGACAATAAATCTGAGATTAGAGGAGAGAGCAGCTGAGAAAGGGCTGAGTCTGGAGTCCAATCAAGACTCCCAAGCCAGTGCAGGCTGGGTCCTCAAAGCTCTCCTCCCTCTGAGCAGGTGGGGGTGTGCTCTCTCTCTCTCTCCCTCAG
Seq C2 exon
ACTCGGCAGCTGGTGAAGGACGGCTTCCTGGTGGAAATGTCTGAGAGCTCCCGGAAGCTGCGGCATGTCTTTCTCTTCACAGATGTTCTGCTGTGTGCCAAGCTAAAGAAGACCTCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631:ENSMUST00000072740:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(57.4=66.0)
A:
NA
C2:
PF0016924=PH=PU(23.4=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types