DreINT0000883 @ danRer10
Intron Retention
Gene
ENSDARG00000090741 | AL954146.4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7FDJ9]
Coordinates
chr23:37436250-37439899:-
Coord C1 exon
chr23:37439766-37439899
Coord A exon
chr23:37436657-37439765
Coord C2 exon
chr23:37436250-37436656
Length
3109 bp
Sequences
Splice sites
5' ss Seq
ACTGTGTGT
5' ss Score
1.91
3' ss Seq
TTCTGAATTTGTGGTTGCAGGTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CAATGCTGGTGGGAAAGTGATTGCTGACTTGGCTCTAGATTTTTGGAGAGAAGGGAAAAATCGGGAAGATCTGTGGATGAACAGCAGGGAGCTGGAGATTAAAATCTCTACAAATGTCTACAATGATAAGAACT
Seq A exon
GTGTGTATTAGTGATTAGTTGTAAAATAATTGAATAGTTAAATTATTTTGCACGGATATGCAGGGTGGCTGTAAACTAATAGGCAATAGTTAAAGAGAAACATCAGCTAAAAATGAAAATCAACGAAGTATTTACTCGCACTCAAGTGGTTCCAAACTTATGAGATTCTTTTATCTGTTGAACACAAAAAGAAGACATTTTTTGAATAACCGGTAACGATTGACACTCTATAGTAGGAACAACAAATATACAAGTTAATGGTTACCAGTTTCCTACTTTCTTCAAAACATCTCAGTAAATGATGACAGATTTTGCATTTTTAAGTGAACTATCCCTTTAATGGCTATAGAATGTACATTTAAAGTATTGTATGGTTTGGCACCTCAATATTTCCTAGAACTTTTAACAGTTTACTCTCCTGATCTCTGTTTCCAGTCTTTTAAAAGTTCCCTTAACTTGTCTGCATTCTATGGGAACTCACTTTCCTTTAATTTAAGGCATGCAAAATCTTTTAATGCTCATGTACTGTTCAAATTTACTACCCTTTCGTTGTTTATGGCTTTTTGCCTCATTGATTTTTTCAATTAAAATTAAAAATATATATAAATATAGTAAAAATTAAGAAACTGTACTTCTGCCCAACAGGGAAAACCACAAAAAATTAAGAATGCATGACTATGCATATGGTGTCATGGCTTTGCATGTAATATAGACACAAATATAAAAGAAGTCAATAGTGCCGAAACAGCCACAAACATCTTAAAAGAGTTGTAAATTTGCACAGAGTGTGTTGAGTTTTTAAAGCATTTTCACAAAATATGTGTCAAAATAACATTTGTCACCAAAAATCATTACATTTGCTGAAACAGAGAAAGTTGTGGCCAAATTAAGAGTCAAAAATCGCCCCAGAGTGGATGAAAACATCCCCAACAACACACAAAGGATGAGATGCACTTTTTAGACTCGCCTACCTCTGAGGTGTGCGTTATTAGTGTGTTTTAGTTTTTTATTTAATTTAGACATGTTACACAAAGCAATGCTGTTTTATCCCTCTATATTTTAAGTGTAAAATGCTTTGAGAATTAAGTTTAAAAGGCACTAAATAACGCATATTTTATTATTATTATTATAGAACTTATGTCACTAGAGTCATGATGAAAACTAAATACTAATAAACTAACTACTGTCTCTAAACAGACATTAGTAAACAGGATTTCTTATTTGTGGATATAGACATAAACTATTAAAGGCAGTATTAGCTAGACCAGTGGTTCTCAAACGTTTTTAACTAAGTACCACCTCAAAAAAAAAAAAAAAAAAAGTCCAAGTACCACCAAAATGACCAGTATTTAAATAAAGTAGCATAGTTGGCCAAATTAAGCAGCTGCAGCAATGCACAGTTCGAAAACAAGGCATATCCATATTTATATAATTTGACAACTTGACCATGTGACTTGCGGAGCGGCATTCTGAAAAGATGTTTTTAACTGGGCACGCCTGGAATACGCAAGATCGTCATGCTGCAGTTCCTACTCATTTTGCTAGCCTGTTGGTTAAATGTTGATGCTTAAGTGACTAAGATTTAACAAGAGAACACGGTCATTTTTCAAACTAAATAAAACTTCAAAATAAATGATCGTTCGGTACTAATTGATCTATAGACCGGTGCCAGTCTGTGGCCCAAGGGTTGGGGAACACTGCTCTTGTATCTGCTCTGCAAGCACCACACACCTCTTTCTCTAGTTCTGCCTTATATGGATTGATATTTAGCAGCTGATGATAGCCCCTTTCACACATACAGATCTTTCCGGAAAATTGCCGGCAATTTTCCGGAAAGGTTGTATGTGTGAACAGGTCCTTTTTGAAAATACCGGTAAATTCGTTCTGGCTATTTTCCGGAAAGAGAAGTTGTAACATTACTGGTAATTTGTGAATGCAGAAGGAAGATTGCCGTAATCTAGAACGTGCTGACGTGAGACGTCTGCTTTAGCCAATCGCAACAGTCAGACGCATTTACGTCCGCGCGGTTTAAGAGAATAAAAGCCTTTGAATATTTTTCCAGACACATTTAGCTGCTAGAAGTTAGTCAGATCACGTTTATATGTTCTTCTTAATGCCAACTGTGTAAATAATCATCGATGAGATGCTTATGATAAGCCGTTGTTTGTTTACCTTCAAGCTTTGCGTGTGCCTGTGAAACAGCCTGTGAGCGCCTGCACACGCACATATTATGAACATCTCGACATGCGAAAGTGATCCTGCGAAAGTTATTCACAATATTGATCATCCACAGAGTCTGTAATTTAGTCAAATGTTTACAAATACAAGCGCAGCCGTTTAAAGTTTAATTGTGGTGAATGATGTCAGAAATTACCGGTATTTTGGAATGCATGTGTGAATGCTCTTTTCCGGATAATTTCCGTAACGTCCTCGCCTGTGTGAACAGCGCTTTTTTGAATATACCGGTAAAGTCGTTCCGGAAATTTTCCAGATATTTACCGGTATCACTGTGTGAAAGGGGCTGATGACTCGATGCACTAAAGTAAACATTCTAAGCACAGTGCTTTTGATCATTGTCTTTAGGAGAACAGCCAATTTTGATCACATCCGTGTTATCGTATGCATCAAATGATTAAAATTGTATTCATTTTTTCTTTAATTACTTAGTGATTCCTCCGCGTACCACTAGTGGTACATGTACCACAGTTTGAGAACCACTGACCTAGACTGAGGTCTGCTTTTCACCCACTCTGCATTTTTTAAACATTTTGTCACCTTGGATTTATAAGGTTATATCTACATTCTGAATAAGTTTGAGATATTGAGCTTCAAAGTTTTTGCATTCCATATAGCAAACAGTATGTGTGTAACATTTGTTTTCTTAATAAAAAAAAAGTCTTAAAATGTAAACAATTTATAAAAAAAACATCCCACAATGTAAATAAGTTGTTATTTTATAAGAATATATCAATAACTCAATTTTGATAAAAATGTCAGATAGAATCTTATAAGTTTAAGGTGACGATATTTCAAAAGCCAATGTGTTTTGAACTCAACAAACCATTTAATCTTATGTTTATAGTATTCTTTTCTGAATTTGTGGTTGCAG
Seq C2 exon
GTGGATTTCTGCACACTAGTATTATAGACGAGCATCTGATTGATCACTTTATTCCTTTCCTACCTCTGGAGCTGAAGCATGTTCGCCAGTGTGTTTTGGCTGAGATGAAGCATCTGAACATCACAAAAGATGATGAACTGGCTGATGAAGTGGCCAGAGACATGCCTTACTTCCCTGAAGAAGAGAGAATATTTGCTGTTAAAGGCTGCAAGTCAGTCAGACAGAAGTTGGTGCTGCATGTTGATGAATAGACTTCTCACAGCTGTTTGCTTTATAAATTATTTGTAGAACCAGAACTTGTGCATATTTATTCCTGCACCTCCACCTGCTGGTCATCATGTGACATTGTCAGAGCTTGAACGTCAGTGAATGTCGCTTACAAAGAAAGATCCCAACAAACACATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090741:ENSDART00000126892:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]