DreEX6082028 @ danRer10
Exon Skipping
Gene
ENSDARG00000090741 | AL954146.4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7FDJ9]
Coordinates
chr23:37436250-37440223:-
Coord C1 exon
chr23:37440051-37440223
Coord A exon
chr23:37439766-37439899
Coord C2 exon
chr23:37436250-37436656
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGATCTGTGTTTATTTGTAGCAA
3' ss Score
7.95
5' ss Seq
ACTGTGTGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GCTCAGCTAAGGCAGTGGATTTATGGAAATGTATCCAGCTTTCCCCGGTCCATGTTCATATTTGATGAAATGGACAAGATGCAACCACAGCTGATTGATGTCTTAAAACCTTTTCTGGACTACTCTCTGGTGAATGGAGTATCATTTCACAATGCAATCTTCATTTTTCTCAG
Seq A exon
CAATGCTGGTGGGAAAGTGATTGCTGACTTGGCTCTAGATTTTTGGAGAGAAGGGAAAAATCGGGAAGATCTGTGGATGAACAGCAGGGAGCTGGAGATTAAAATCTCTACAAATGTCTACAATGATAAGAACT
Seq C2 exon
GTGGATTTCTGCACACTAGTATTATAGACGAGCATCTGATTGATCACTTTATTCCTTTCCTACCTCTGGAGCTGAAGCATGTTCGCCAGTGTGTTTTGGCTGAGATGAAGCATCTGAACATCACAAAAGATGATGAACTGGCTGATGAAGTGGCCAGAGACATGCCTTACTTCCCTGAAGAAGAGAGAATATTTGCTGTTAAAGGCTGCAAGTCAGTCAGACAGAAGTTGGTGCTGCATGTTGATGAATAGACTTCTCACAGCTGTTTGCTTTATAAATTATTTGTAGAACCAGAACTTGTGCATATTTATTCCTGCACCTCCACCTGCTGGTCATCATGTGACATTGTCAGAGCTTGAACGTCAGTGAATGTCGCTTACAAAGAAAGATCCCAACAAACACATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090741-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=34.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAGATGCAACCACAGCT
R:
GCCACTTCATCAGCCAGTTCA
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]