DreINT0000916 @ danRer10
Intron Retention
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68222960-68223180:-
Coord C1 exon
chr5:68223108-68223180
Coord A exon
chr5:68222981-68223107
Coord C2 exon
chr5:68222960-68222980
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATTCCTCTTGGTTTTTCTAGGAA
3' ss Score
10.41
Exon sequences
Seq C1 exon
ACCACCACTGAAAAACATCGCATGAGTTTCCCTGAAACCGTTGATGAGATCCTGGATGTGTCTGAAGATGAAG
Seq A exon
GTAAAAACAACTCTGTATTCACCATCACAATCTGTTTTTGAGTTATTAGCATTTACTTATTTGAATACAAGACAATGATCGGCCATTTAAAGAGCATCCTGAAGTAGATTCCTCTTGGTTTTTCTAG
Seq C2 exon
GAATTGCACAGCTAACATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093:ENSDART00000137443:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]