MmuINT0015070 @ mm10
Intron Retention
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23109657-23110370:+
Coord C1 exon
chr8:23109657-23109729
Coord A exon
chr8:23109730-23110346
Coord C2 exon
chr8:23110347-23110370
Length
617 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GGCTCTTCTTTGCCTTCCAGGAA
3' ss Score
10.36
Exon sequences
Seq C1 exon
TTAGTCAGTGACAAACACCGGATGAGCTACCCTGAGACGGTGGACGAGATCCTGGACGTGTCTGAAGATGAAG
Seq A exon
GTAAAATCTTTGTGGATGAACTCAGGCTCCATTCTCTCAAGCATCCCTCAGAGCCCCTCAAACCTATCTAGCCTAAACATACAAGTATACAATGTAGCTAGGGAGACCCACTTCTTACAGACATTGCCTATTGACAAAATAACTCCTTTCAGATGATCTCGAGTCTTCATGGGCAAGTTAGTTGGTAGGTTTGATACAATTGCATTTGATCAAGAGCTGGCAACAGCTGCAGCAACATCTGGCTGCTGTTCTCCTTGAGCTTCAGTAACTAATAAGGCAGGTTTTTAAGACTGAGAACGCATACTGGTCAGCTGCCCTTCTGACCTAGTGGGGCAGAAAGTTTGAAGTCTTCTCCATTACCATTGGGTGATGGGTGATTAAGGTTTCAACTTTGTGATCTCCAGAGTATCTTTCACCTCCTTTCTCCCCACTCCCAAGTAAGCCCCAAATCAAGGGAACCCAGGATAGCGAGGATGGGCTTGATCTGTGGCCCCCTCTGTCTAGAATTTGGTGGTGGTATGACGGTCAGCTAGACAGTTCTAATGCCCCCTTCTTAATAACGTGCCTCTCACTATACTGGGTCTGATGCTTCAACTTGGCTCTTCTTTGCCTTCCAG
Seq C2 exon
GAACTGCTCACATATCTATAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543:ENSMUST00000118733:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types