HsaINT0008031 @ hg19
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41557949-41559140:-
Coord C1 exon
chr8:41559068-41559140
Coord A exon
chr8:41557973-41559067
Coord C2 exon
chr8:41557949-41557972
Length
1095 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
TGCTCTCCTTTGCTTTCCAGGAA
3' ss Score
11.01
Exon sequences
Seq C1 exon
TTAGTCAGTGATAAGCATCGAATGAGTTTCCCTGAGACAGTTGATGAGATCCTGGATGTCTCGGAAGATGAAG
Seq A exon
GTAACGTTGGGGTAAAGAGCTCAGGCTGGTGGGGACAGAGGGGCTCCGGGCACCCTCCAAGGGGGCTTCCTGCCACCTGCCGGCTTTGTCCCCTTACAACACGCCCAAGCACTATAGATGGACACTGAAACTGGGGAGACCTGGTTTTTATAACTGTTGTCTACTATCAAAAATACTGCTCTATTAATACTTAGGTGAGGGAACATTGACTAAATTTAAAATCCCATGAAGTTTCAAAAACACATGTATGTTTGCATAGATTATGGATGTGTATGAAATCGGAGCGTGGTTCTACTGAGATCAAGTCTCCGCACCATGAGGAACTGTAATAAAATTCTGCCTGGTTCTTTCTTTGTGCTTTGAACGAATACTAAGTGGATTATTCAAAATCTGTGAGCATGCCTTTTAAGCTGCACTTCTGACCACATAGTGGGTCAATAGGTTTTGGGTTATTTCTGTGATTATGAAATTACTATAGTCTGGCTGGGTGCCTGGGTTCATGCCTGTAATCCCAGAACTTTGGGCAGCCGAGGTTGGAGGATTGCTTGAGGCTAGGAGTTCAAGACCAGCCTGGGCAATATAGGGAGACCCCCGTCTCTCCAAAAAATTAGAACTAAAAATTAGCAGGGTGTGGTGGTGCACATCTGTAGTCCCAGCTACTCCAGAGGCTGAGGTGGGAGGATTGCTTGAGTCCAGGAGCTTGAGGCTGCAGTGAGCTGTAATCACCCCACTGCACTCCAGCCAGGGTGACAGAGCAAGACCCTGTCTCTAAAAGAAAAAGAAAGAAATTACTATAGTATCAGCTTGTATGAACTACAGAATGCTTCTAGTATTTTTCCTACCCCCAGCAAACCTTATTTCATCACTAATTAGATGGGGATGTTGAGTAGTAGGATCCTCAACTCTGAGGATGTTGAATAGTGGGGTGGGCTGGATCAGCTCAGTGGTCCCTTCCATCTGGATAATTTCATGGTTGTATAACTTTGTCAACTAGAGAAGCAGAGCTTCTGGTGCTCCTTTGGATAATATATGCCTCTCGCTTTAACTGCCTTCAATGTGGTCCTTCTTTCAATTCTGCTCTCCTTTGCTTTCCAG
Seq C2 exon
GAACTGCTCATATAACTATAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-ANK1:NM_001142446:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)