GgaINT0136019 @ galGal4
Intron Retention
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2623352-2624671:-
Coord C1 exon
chr22:2624599-2624671
Coord A exon
chr22:2623455-2624598
Coord C2 exon
chr22:2623352-2623454
Length
1144 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GAGCCAGCTGTTGGTTTCAGAGG
3' ss Score
1.8
Exon sequences
Seq C1 exon
CCATTCAGTGACAAGTACCGCATGAGCTTCCCGGAGACCGTGGATGAGATTCTGGATGTGTCGGAGGATGAAG
Seq A exon
GTGAGGGGCTGGAGCTTGGTTGCACCCCTAGAGGTCTGCTAGCAGCCCCAGGGATGGGCCCAGGGTGGGGAGCTCCCTGGCCCCACTGGGGTCTTGCAACAAGGAAGCAGGAGCCCAGCAGTCACCTCCTGGCTTGGTCTTCCCCTGCGCTATTCAGGGGGGTGGTGCCCAGACCTGAGGATGGTGTGCAGAGGGACCTTGGGCACTCTGAGCACTGCACCATGCTTTGCTCCATGGGCGGTACCAGCCCACAGCCTGGCTGCAGCTGGTTTGCTCCTACCCCCTCCCACCAAGACCTCACTTTTACCTCTTCTTACTTTGCAGGCACTGCTCATGTCACAGTAATGGGTATGAAATTTGTCCCTGTGCCCCAGCTCAATGGCCCATTTCACCCCATGGCCACTAACCATCCGCACGCCGCTTCCATCTGCTGAGCCTTGCTGCTGGGCTGGTACTACCCAGCACAGGCCCTGCCATCCTGCCCTGCCCATCTGTGTCCATGCTGCTTACTGTGGTGTGACTGCATGAAGGGGACTATCCCCGAGCAGAGGGAGCCCTGGCTCTCATCAGCCTTGCTCCCAGCAGCAGGAGCCTGCTCCTATTGTAAGCCCTGGTGCCCGTCCACAGCCAGCCCATGCTGCTCTGGCCTTGGTGGTATGAAGCGGAGCACTGGAGGGTCCCTGTGCTGTTCGTCACTCTGGCTCTCCCTGCACTGGGAGGTGCTGGGCTCCTTCCAGCAGGGCTCTAGCATGAGCTCAGCCCCGGTGGATTCCTTAGCAGGTGTTAATTGGGTGCCAGGTGGGGATGGCTGGGCTCATGCCCCCAGCGAGACATGCATGGGTGAACTTGGTGGCCTTGGTGAGTCCTTCCTGTGGCCCCAGCCCCACCTGGTGGTGGGGGGCCCCAGCAGGCTTGGCTCTGTGCTTGAGTGCTGTGAGGTTGCGGTTGGCTGGCTCCTAACATCTGCCGCAGCTCCTGCCACACTAACAGCCCAGGCTTCTGGCAGAGGGAAGAGCCTTCAACGGCTGAGACCCAGGGGATGAATGTGTGTGGCCAGTGGTGGGAGCAGGGATGGGAGTAAAGCTTGGAAGCTGTGTTCCTTTGTCCTGCTGCCTCTGTGTGCTGAGCCAGCTGTTGGTTTCAG
Seq C2 exon
AGGAGGAGCTGGTCCCACCGAAACCCAGAACACCTGAACCCAAGGAGCAGGAGGGCAAGAGGGAGATGCTGGAGTTTGTGACCGTGACAACACTGGAGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]