GgaEX0004697 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2623352-2624671:-
Coord C1 exon
chr22:2624599-2624671
Coord A exon
chr22:2624251-2624274
Coord C2 exon
chr22:2623352-2623454
Length
24 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTCTTACTTTGCAGGCA
3' ss Score
10.36
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
CCATTCAGTGACAAGTACCGCATGAGCTTCCCGGAGACCGTGGATGAGATTCTGGATGTGTCGGAGGATGAAG
Seq A exon
GCACTGCTCATGTCACAGTAATGG
Seq C2 exon
AGGAGGAGCTGGTCCCACCGAAACCCAGAACACCTGAACCCAAGGAGCAGGAGGGCAAGAGGGAGATGCTGGAGTTTGTGACCGTGACAACACTGGAGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX2-2/14=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=1.000 C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000005683fB501
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTACCGCATGAGCTTCC
R:
GCTCCTTGGGTTCAGGTGTTC
Band lengths:
111-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]