MmuEX0004884 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23109657-23111456:+
Coord C1 exon
chr8:23109657-23109729
Coord A exon
chr8:23110347-23110370
Coord C2 exon
chr8:23111360-23111456
Length
24 bp
Sequences
Splice sites
3' ss Seq
GGCTCTTCTTTGCCTTCCAGGAA
3' ss Score
10.36
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTAGTCAGTGACAAACACCGGATGAGCTACCCTGAGACGGTGGACGAGATCCTGGACGTGTCTGAAGATGAAG
Seq A exon
GAACTGCTCACATATCTATAATGG
Seq C2 exon
GTGACGAACTTGTCGGCTCGAAGGCTGAAAGGCGGGACTCCCGGGATGTGGGTGAGGAGAAAGAGCTGTTGGATTTTGTGCCGAAGCTAGACCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'27-41,'27-40,28-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=0.667 C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATCCTGGACGTGTCTGA
R:
TCGGCACAAAATCCAACAGCT
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types