HsaEX0004117 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41556970-41559140:-
Coord C1 exon
chr8:41559068-41559140
Coord A exon
chr8:41557949-41557972
Coord C2 exon
chr8:41556970-41557066
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTTTGCTTTCCAGGAA
3' ss Score
11.01
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTAGTCAGTGATAAGCATCGAATGAGTTTCCCTGAGACAGTTGATGAGATCCTGGATGTCTCGGAAGATGAAG
Seq A exon
GAACTGCTCATATAACTATAATGG
Seq C2 exon
GGGAAGAACTCATCAGCTTCAAGGCTGAGAGGCGGGATTCCAGGGATGTTGATGAAGAGAAGGAGCTGCTGGATTTTGTGCCGAAGCTAGACCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.257 A=0.111 C2=0.318
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATCCTGGATGTCTCGGA
R:
TCCAGCAGCTCCTTCTCTTCA
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)