HsaEX0004117 @ hg38
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41699452-41701622:-
Coord C1 exon
chr8:41701550-41701622
Coord A exon
chr8:41700431-41700454
Coord C2 exon
chr8:41699452-41699548
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTTTGCTTTCCAGGAA
3' ss Score
11.01
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTAGTCAGTGATAAGCATCGAATGAGTTTCCCTGAGACAGTTGATGAGATCCTGGATGTCTCGGAAGATGAAG
Seq A exon
GAACTGCTCATATAACTATAATGG
Seq C2 exon
GGGAAGAACTCATCAGCTTCAAGGCTGAGAGGCGGGATTCCAGGGATGTTGATGAAGAGAAGGAGCTGCTGGATTTTGTGCCGAAGCTAGACCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.292 A=0.111 C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATCCTGGATGTCTCGGA
R:
TCCAGCAGCTCCTTCTCTTCA
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development