BtaEX0003402 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36301890-36304214:-
Coord C1 exon
chr27:36304142-36304214
Coord A exon
chr27:36303368-36303391
Coord C2 exon
chr27:36301890-36301983
Length
24 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCTTTGCTTTCCAGGAA
3' ss Score
10.62
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTGATCACGGACAAGCACCGGATGAGCTTCCCAGAGACGGTGGATGAGATTCTGGATGTCTCTGAAGATGAAG
Seq A exon
GAACTGCTCATATAACTATAATGG
Seq C2 exon
GGGAGGATCTTGGCCCCAGGGCAGAGAGGCCGGATGCCAGGGATGTAGATGAAGAGAAAGAGCTGCTGGATTTCGTGCCGAAGCTGGACCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.620 A=0.778 C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000004242fB551
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTTCCCAGAGACGGT
R:
ATCTACATCCCTGGCATCCGG
Band lengths:
103-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development