GgaEX0004697 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2673621-2674940:-
Coord C1 exon
chr22:2674868-2674940
Coord A exon
chr22:2674520-2674543
Coord C2 exon
chr22:2673621-2673723
Length
24 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTCTTACTTTGCAGGCA
3' ss Score
10.36
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
CCATTCAGTGACAAGTACCGCATGAGCTTCCCGGAGACTGTGGATGAGATTCTGGATGTGTCGGAGGATGAAG
Seq A exon
GCACTGCTCATGTCACAGTAATGG
Seq C2 exon
AGGAGGAGCTGGTCCCACCGAAACCCAGAACACCTGAACCCAAGGAGCAGGAGGGCAAGAGGGAGATGCTGGAGTTTGTGACCGTGACAACACTGGAGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=1.000 C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTACCGCATGAGCTTCC
R:
GCTCCTTGGGTTCAGGTGTTC
Band lengths:
111-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]