RnoEX0009324 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73773577-73775441:-
Coord C1 exon
chr16:73775369-73775441
Coord A exon
chr16:73774653-73774676
Coord C2 exon
chr16:73773577-73773673
Length
24 bp
Sequences
Splice sites
3' ss Seq
CCTTCAACTCTGCCTGCCAGGAA
3' ss Score
7.51
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
TTAGTCAGTGACAAACACCGGATGAGCTACCCTGAGACAGTGGATGAGATCCTGGATGTGTCTGAAGATGAAG
Seq A exon
GAACTGCTCACATATCTTTAACGG
Seq C2 exon
GTGACGAACTTGTCGGCTCGAAGGCTGAAAGGCGGGACTCCCGGGATGTGGGTGAGGAGAAAGAGCTGTTGGATTTTGTGCCGAAGCTAGACCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'32-33,'32-32,33-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.520 A=0.667 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTACCCTGAGACAGTGG
R:
AGCTCTTTCTCCTCACCCACA
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]