GgaINT0136019 @ galGal3
Intron Retention
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2674520-2674940:-
Coord C1 exon
chr22:2674868-2674940
Coord A exon
chr22:2674544-2674867
Coord C2 exon
chr22:2674520-2674543
Length
324 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TACCTCTTCTTACTTTGCAGGCA
3' ss Score
10.36
Exon sequences
Seq C1 exon
CCATTCAGTGACAAGTACCGCATGAGCTTCCCGGAGACTGTGGATGAGATTCTGGATGTGTCGGAGGATGAAG
Seq A exon
GTGAGGGGCTGGAGCTTGGTTGCACCCCTAGAGGTCTGCTAGCAGCCCCAGGGATGGGCCCAGGGTGGGGAGCTCCCTGGCCCCACTGGGGTCTTGCAACAAGGAAGCAGGAGCCCAGCAGTCACCTCCTGGCTTGGTCTTCCCCTGCGCTATTCAGGGGGGTGGTGCCCAGACCTGAGGATGGTGTGCAGAGGGACCTTGGGCACTCTGAGCACTGCACCATGCTTTGCTCCATGGGCGGTACCAGCCCACAGCCTGGCTGCAGCTGGTTTGCTCCTACCCCCTCCCACCAAGACCTCACTTTTACCTCTTCTTACTTTGCAG
Seq C2 exon
GCACTGCTCATGTCACAGTAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]