DreINT0001911 @ danRer10
Intron Retention
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30579639-30581631:+
Coord C1 exon
chr8:30579639-30579778
Coord A exon
chr8:30579779-30581496
Coord C2 exon
chr8:30581497-30581631
Length
1718 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GTGTTCTTATGATTTCACAGACA
3' ss Score
9.17
Exon sequences
Seq C1 exon
ACGCGAACACTCCAAAGTGCCTCTGATTGTGAGACAGTGTGTGGAGGAGATCGAGCGCAGAGGGATGGAGGAAGTGGGCATCTATCGGGTCTCTGGTGTGGCCACAGACATCCAGGCCCTGAAAGCTGCATTTGATGCCA
Seq A exon
GTGAGTAGGATTTTTTACAACAATAAACATCAGATTATATTGGATATTTATTTCTGTATCTTATGTAGGTCTTATGCAATACTCAATATATTGACTTATTGTGCAATACATGAACATGATGCAATATATATCACCCATCTTATTTACATGCAAATGAAGCTCACTAACATTTCAGCTGATTGCGCAGTCTTTTTATCTTATCTCTATTGGAGGCATCAGCGAGCTCAGGAAACTCCTATAGAGACTATATGCTTGCTGACAGATATAGAGAAAAGGGGAATTTACACATCAAAACTACTGATAGTTTTTAAGAAGTTGTTTAAATGAGCTCATTACATTCTTCAAAGTCACCAGTGCCAAAGTTTAAATTGGGTATTGTCTTCATTTTATATTTTGACATTGTATATTATTTATATATGGTTGATTATAATCAAATTACATTTAAATAACCTTAATAATAAAAAAGTTTTTTTCATTATTAGTACATATGACTTTCTTATTTCAGACAAATTCCTTTGGAGTAGTTTTAATTTAAGCTGGTTCTTCAATTTATATTGATGTTTGGTTGTGGCCATTTTTTTTTAACTTAGCCCATGTGCCACTGACTTCTGGAGGCTGCCAAATGCATGTTCTAGACAACTTCTTGGTTGACCTCTGACTCGACGTATGACTCATTCATATCGGAAGCTTGTGTGAGAGTTGATGGATGAGGATAACTGTACTTTATACAATAAGGGTTAGGGTAAAAGCAAGAAGTTAGTGGTTTGAGTTGATAATTTAAAAATATTTTAAATATTAGAAATACTTTGTTCCAAAAAACACATAAATTCTCTTCAAAAGACATACATTAACCCCCTGAATGCATATGGGTTATATTTATGAATGATTTATACGCTTTCGGAAGCTTTATAAAAGGGCCACTACCCCAACACCATTATTCAGCATGAAGGAGCCATGATAATATTTAAAATTATTCTGACTGTGTGAGTAAATTATGGGATAATTTTCATTTTTGAGTGAACTATTCCTTTAAATAGGATTTGTTGGTTAATTAAGGAAATGACCACTAGGTGCAGATTACCACCAATAATTGTGTGATGAATCTGAAAGTGTCTACGAGCTGCGTCTGTAAACGCATACTTCCACACTATAAAGTACACTAAAAACAGGATGCGAGTAGAGTAGTATGTCCTAATTCATAGAATTCAAAGAACAGGGTTGTTTCTATTATTTATTAAATTTCCCATTTATTGTATTTTATTAACGTCTACACCCACCCCAACCCTAAACCCAGCCGTCACAGTAACGTAAAAACAGTAGCTGTACCGAGTATTATTTATGATATCTATTAAATTACCCAATAAATTGTATTTTTTAGCGCCTGCTCCCACCACAACCCTAAACCCAACCATCCGAGTAGTACATTTTAATTCAAATGCAGTACCTACTGAGTAGTAGGCGATTTTGGACACAGCCTCTATTTTTAATCAGCGTTCTTTTTCAAATATCTCACCGAATAATGTTTATGCTGTATTTCAGAATAGATATAATGCATGAAATATGCTTAAAAACTGCTCTTTTGCTCCTAATAGCACAACTTCAAATAAGACTATAATAGCAGCGGCCACAAATTCTAAGAAATTCAAGGTTGTTCTCTACCTTTGGTCATCACTGAATATTCTGTAATGCTAAAAATAAGTGTTCTTATGATTTCACAG
Seq C2 exon
ACAACAAAGATGTTTCAGTTATTATGAGTGAGATGGACGTGAATGCCATTGCTGGAACACTGAAGCTTTATTTCAGAGAGCTTCCCGAGCCCCTCTTCACTGATGAACTCTACATTAACTTCACTGAAGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329:ENSDART00000137009:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.0=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCGAACACTCCAAAGT
R:
CGATGCCTTCAGTGAAGTTAATGT
Band lengths:
275-1993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]