MmuINT0024633 @ mm10
Intron Retention
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75177884-75180258:+
Coord C1 exon
chr10:75177884-75178023
Coord A exon
chr10:75178024-75180123
Coord C2 exon
chr10:75180124-75180258
Length
2100 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TGTTTCTGCGTTCTCTGCAGATA
3' ss Score
12.15
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTGCGCCAGTGTGTGGAAGAGATCGAGCGCCGGGGTATGGAGGAGGTGGGCATCTACCGAGTGTCTGGAGTGGCCACAGACATCCAGGCACTGAAGGCAGCCTTTGATGTCA
Seq A exon
GTGAGTATTACCCAGGCAGTGCGGAACAAACAGTGGTGCCCATACCGAGACTCCCACGGGGCCTGGCACATCACACTAATGGGTTCCAGGTCAGCTTTAGCTACATAGTGATTCCTTGTGTCAGACAGATGATTGATTGATGATTAATAACTAGCACACCTATAATCCTAGTATTTGGGAGGTAGAGGCAAGAGGATTGCTGCAGTGTCAAGGCCAGCCAGGGTGGTAGAGCAAGGCCCTGTCTCAAGAGAAAATAAGTAAAATAAAAAGACTTGAGAGCTAATGTGGTCTGGCCATGTTGGTATTAACCTCTGAAGTTAGAGCTACTCAGGAGATTGAGATGGGATCACTTGAGTTAAGGAGATCAGGCCCCACTTAAAACTTTCACGTCTCAAAAGAGAAAGAAGAGACTGGCTGGACAGATGGCTTAGGAAAGAACACGTACTGTCCTTGCACAGGGCCCAGGATAAGTTCCCAGCACCCACAATATAGCTTACAACCACTTGTAACTCTAGTTACAGAGGATCCAGAGTCCTCTTCTGGCCTCTGTGGGATCCTGCATGTGCCTGGTGCACATAAACTCATGCAGGTAGACACAGATACATTAAAAAAAAAAAAAGAAAAGAAAGAAAAGTAGCTAGCTCTTTTTAAAAATCCGAATCCTTCCAAGGTCTAACCACAGCCACCAAGCTGGACCGTGGCCTTCCTTGGGGTGTTGCCTGATGCCTTGGAGTGGCCAGGAGATGCTAAATCCCAGGATAATTTGACTATGCTCCCTTGAGGAAGGTGTGGGACAATGGCATGGATATGGCCCTGGTGCTGTCTCTTTTCTACCTGTCTCCAAACCACTCCCACTCTGTAAGGGAGACAGAACTATCCTGAAGGCTAAGCAAGGGCTTTGAGACCTCGGAGGATCAGTCTTACTTAAGGTCTCTGTTTACTCGGATCAGACACCAAGAGCAAAAGCAATTGGAGGAGGAGAGGGTTCATTTCAGGTTGTGACACTCAGCTCACAGTCTATGATGCGAGGAAGGCAGTCCAGGAACTCAGGGGAGGGACCTGGAGACAGAAAGTAAAGCCACGGCCATGGAGGGATGCTGCTTACTAGCTTGTTCCTCATGGCTTGCTCAGTCTGTCACCTTATACAACCCAGGATCCCCTACTGGACGGGGCCCCCAGTAGTCTAGACCCTTGCCTGTCAGTCATCTGCCAAGAAAAGCCAGCAGGCCAATCTAAGCTCCCCCCCACCCACCCAGTTGAGGTTCTCAGATATATGTAGGCTTTGTTTCAACTTGATAGAAACCAATCAGCACAGGGTTCTTTCTCAGTGTTCCCCAAAGAGCAGGCAGACAGAAACAGGACTCAGAAGGATGTTGTACTTGCAGAGTCTTTATACCACCATCTTGGCCTGGGCCATCAAGGACCCAGCACTCCTCGATAAGACTCACTGTCATGTTTCAGCTTCTCCACGCAGCCTTCTGTCTTAGATAAGGTTTCCATCGCTGTGAAGAGATGTACCATGACCACAGCAACTCTTAAAAAGGAAGCCATTTAACTGGGGCTGCCCTACCGTTCTGAGATGTAGTCCATTTATTGTCATGGTAGGAAGCATGGCAGCTTGCAGGTAGACATGGTGCTGGAGAGGAGCCAGGAGTAGATAAGCAGGCAGCAGGAAAAGAGAGTGAGCCACGGGATCTGGCTTGAGCTTCTGAAACCTCAAAACCCAGCCCCCGTGGCACACTTCCTCCAATAAGGTCACACCTCCAATAGTGCTACTCTCCTGAGTCTGTGGGCACCGTTTTCATTCAAACCACTACACCGGCTCTCTGACACAGAGAACCAGAGGCTGCCTAAGTCCTAAGAAAACACCCAGTGTGACGACTTAAGTGACTCAAACAGTCCCTACGCCTGCCTGCCTCTGCAGCTGGTGGCCCTTCTTCCCAGCAACCCTGTCCAGACTCAGTCACACAAATGCTGGGGGGCGTAGGGAAACAAACCACACAAAGGGGATGGCTACACACGTGTGTCATCAAGCTGTGTCAGCCCAGGCAGGTTGCAGACCTGGGACCCACACGGAGGCTGTTTCTGCGTTCTCTGCAG
Seq C2 exon
ATAACAAGGATGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCCGGCACGCTGAAGCTCTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681:ENSMUST00000164107:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types