HsaINT0017362 @ hg19
Intron Retention
Gene
ENSG00000186716 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:1014]
Coordinates
chr22:23653884-23655208:+
Coord C1 exon
chr22:23653884-23654023
Coord A exon
chr22:23654024-23655073
Coord C2 exon
chr22:23655074-23655208
Length
1050 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CATTTCCGTGCTCTTTCCAGATA
3' ss Score
10.19
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTGCCCTACATCGTGCGCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGAGGTGGGCATCTACCGCGTGTCCGGTGTGGCCACGGACATCCAGGCACTGAAGGCAGCCTTCGACGTCA
Seq A exon
GTGAGTGTTGGCCTGCGCAGGACGGGATGGAGGTGTGGGCAATGGTGTCCGCGATGAGATCTCAGAGTGCTCCATGGCCCAGGCATGTCACATCCTTCTCTGTGTCTTTTCTTCATTTACTGTGTTATTATTTTTAAAAAAGAGAAGACAAGAGTTGTAGAAAAAGCCTCTGTAGAAACCAGTTTTTAAACCATCCTAGCCATGCATGCCACTTGCTGGGGTAGGCCAGGGGTTTCTGCAGGGCCTTGGCCTTCCTGCCTTGGGGTTGGACAGGAGGTGGAAGCCCAGGACTCAGTGCAGTCTGTCCCCTGCCATGTGTGAGGATGCGGCAGGCAGAGGGCACTGATGAAATTCAGCCCAGGCTGGGGCTGCAGCATCTCTGCCTCCATCTCACCAACCCTCACAGGCTATGAAGGACCTGGAACTGTCACAAATGCCAGGGGAGGGCACTGAGACCCCAGAGGGTCCCTCCCAGCATCTTCAACAGGATTTTGTGCCTGCAGACCCTTCTTTGGGGCACACACCACCAACCCTGACCAGGACCCCTAGAATGCCCAGCATCCCTGGGAGGGCCCTGTGGTAGTTTCAGCTCCCTCTGGGGGCCCAGAATGAACCTGGCCTGTGGTGAGGATGTAAGCACCAATGGCCAATTGGGTCCAAAGGAAGACACCGGTTCAAACACTGAAACCAATCAGATTCTCCCACGGCCTTCCTGCTATCAGACGACACTGGTGCAGGGGTGGTTGCTATGTACAGGGCAGAGCCACCCAATCCCCACGCAGGCGCTGTGTCCTGCCACGCTGGCCTCCTCCTGGCCATCACATCAGGCCAAGCAGGGGAGAGGAATGGGAATGCCCACGCACCCCTATCAACTCTGCAGACACAGAACCATGCACAGCTCTTGGGAGGAGTCAGATGAGCTGCTCAAAGCCCAGGAGGGACCCGCACAGTGGTCAGCATGGCAGGGACAGTGCTTTAGCCAAGGCAGGGATGGTGGGAGACTCACTCGGGATCCTCAAGGAGGCCGCTGCATTTCCGTGCTCTTTCCAG
Seq C2 exon
ATAACAAGGACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATCGCAGGCACGCTGAAGCTGTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACTGACGAGTTCTACCCCAACTTCGCAGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186716-BCR:NM_021574:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAGGTCCAAGGTGCC
R:
GATGCCCTCTGCGAAGTTGG
Band lengths:
274-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)