DreINT0037257 @ danRer10
Intron Retention
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17218865-17219219:+
Coord C1 exon
chr21:17218865-17219004
Coord A exon
chr21:17219005-17219084
Coord C2 exon
chr21:17219085-17219219
Length
80 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTGATTTCTCTCTGTAACAGATA
3' ss Score
10.02
Exon sequences
Seq C1 exon
ACGGGAGCGCTCTAAAGTGCCCTACATCGTCAGACAGTGTCTAGAGGAAATCGAGAGAAGAGGAATGGAGGAAGTGGGTATCTACCGTGTCTCAGGAGTGGCCACAGACATCCAGGCACTCAAGACTGCCTTTGACACCA
Seq A exon
GTGAGTGGCCGTCAGACTCCCAGAGCAATAACAGACACGTCCGTTTAGCCAGTTTAACAGCTGATTTCTCTCTGTAACAG
Seq C2 exon
ATAATAAAGATGTGTCGGTAATGATGAGTGAGATGGATGTGAACGCCATCGCCGGGACGCTGAAACTGTACTTCAGAGAGCTTCCTGAGCCCCTCTTCACTGATGAGCTCTACCCTAACTTTGCAGGGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286:ENSDART00000101282:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.0=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTACATCGTCAGACAGT
R:
CGATGGCGTTCACATCCATCT
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]