GgaINT0008638 @ galGal4
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8583498-8585148:-
Coord C1 exon
chr15:8585009-8585148
Coord A exon
chr15:8583633-8585008
Coord C2 exon
chr15:8583498-8583632
Length
1376 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCCCTTCTTCCCTCTTTCAGATA
3' ss Score
14.06
Exon sequences
Seq C1 exon
GAGGGAGAGATCAAAGGTGCCTTACATAGTGCGCCAGTGTGTGGAGGAGATAGAACGCCGTGGAATGGAGGAGGTGGGCATCTACCGCGTCTCTGGGGTCGCAACCGATATCCAGGCTTTGAAAGCGGCCTTTGATGTCA
Seq A exon
GTAAGTATTTGTGCCTGATGCTTTCCTCCTACTGTGAGAACCTGTGTGAGCTCCCTGTCAGATGGCTGTGCTATTTTTCAATCTTACTTTCCCTGAGAAGCATTAAGAGGGAGAGATTCTCATTCAAGGAGAATCATTTTAAACCTGGCTGCATGTTTTATTCATATTCCTCAGCTACAGATGCGACCCAAGATGTACAATGAAATAGATCCCTGTACCAAATAACACATCTGTTATTCCTCCCAGCAGACATGACATGGCTGGTTTGCAGGCCTTGCCAAGACTCTGTGCATGGCAGGTAGCTTCCTCAGGAGAAGCAGCAACCAGAAGCTGCAGTTTTCCTCATTGCTGCCTCTAAATTAAGTCCTTGGAATTGTTTGAGAGTATTTTGTGAAAGGAAGCAAGCAACAAATGAATTCTGTGGTTGATTAGGAAGAAGAGGTGGTTTTCCAGTCAGAAGATGGGTGGTCAGGGCTCTTTTCTTGACTCTGTAGCTAGACTGCTGTGTGCAGATTGTAAATTCAGTTAATTTTGACCAGTATTTTAAAGCCTTCCTTGATCTTGTGCAGAACAATGCTCCTTAGTGCTGCTGCGTTTGAAGGAATGACATACATGTCCCCAAAAGACATCCAAACCCAGCAGATTAAACACCTCCAGACTGTTGTGCTATGGGAAATGAAATTTCTGCCATGCCTTCAGCATCCACCTGATAATCTTTCTTTTCTTCTGTGGTATTTCTTCATTCTTCTATTTTCCTTTCTGTCCCCCTAAGCTACCAAAAGCATTGATTTGTGAATCCTCAGTAGTGCAAGTAAAGGTGTTTCCTATTTTAAAAAACAACTTTTTTTTGTTTACATTAAATGCCATTTTCTGCTAAGCCAGCATTGGCTCTGCTGGTTGATGTTTGTTTTCAGGGAAGGAGGTGGTTCTGTTGTTCTTAAAAGTAACAAAGCTGAAATGTGAGCCCTGAATTGCCTGTGTACTTTAGCTGCACTCAGTGGGGAGTTGGACAGCCTCAGAGTCTCTTATTCTAAGCTGTTTGAGGCAGGGAACTGGAATAACCAATGTGGTCATTAAGAAAAAGTTGAAATGCATATAAATGCAGTCATGCAGGGCTTTTTCCAGGTCAAGCCTGCCTTGCTGGCAGAGCAGAAGGAACCATGGATAGTGTCAGCTTCCTTCTAGTCGATATAAAGCTGGAAACTGCAGCCATTTGTGCAGCATTTCTCAGATGTCATTTAACTGAGAGAAATGTAAACAGGAAAACTCTCAGCTATTTGGGCAAAGACAGTGGATAAACAAGGAGTCAAAGCAATCAAAAACTGAATGCAAGGCCAGCAATTTATTAACCCTTCTTCCCTTCTTCCCTCTTTCAG
Seq C2 exon
ATAACAAAGATGTGTCAGTGATGATGAGCGAGATGGATGTTAATGCTATTGCGGGCACATTGAAGCTCTACTTCCGAGAGCTGCCTGAACCTCTCTTTACAGATGAACTGTACCCCAACTTTGCAGAGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.0=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGAGATCAAAGGTGCC
R:
CCCTCTGCAAAGTTGGGGTAC
Band lengths:
270-1646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]