DreINT0005682 @ danRer10
Intron Retention
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53189581-53191784:+
Coord C1 exon
chr3:53189581-53189653
Coord A exon
chr3:53189654-53189737
Coord C2 exon
chr3:53189738-53191784
Length
84 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATTTTTTTATGGTCCTTCAGTCG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GATCTCTGACTCAGTCTACCTCAATGTCTCATGTAGAGGCAGCAGGACGATCATGGAGTAAGAAACCACTTAG
Seq A exon
GTAAGGTATTTCCATGTCGCTTGATGTATTTAATTTTTTAAAAATAACACTTTGTCTTAACAATATTTTTTTATGGTCCTTCAG
Seq C2 exon
TCGTCCGCTGTCTGCTGTGTCCTTCAGTATCCCCTTTGGTCTGGATAGTGATGTGGACATTGTAATGGGGAACCCTGTTATTACTCGGTCTGTCAGCTCGGACAATCTCAACCCTGGTGGCCAATCCATGACACGTGTCCCCTACACGCCTCCAGAGGACCTTAGCCACTTGCTGAGTAAGGCCCCTGGGCCTAATGGCCCTCAGAGAGCTTCCTGGGGTATTCGAACTCGTCCAATGCTGGCTGAAGAGAATGGCATTGAGGAAAGTGAGACGGGAGAGCTTCCAACCATTGAAGAGGCTCTGCAGATCATCCACAATGAAGAGAAGATGGAGCCTCGCCTTCACCCTGAGGGGGCACCCGATGGTTTCTATCTGCATTCACCAGATGATCCAGCTAACGCAAGACTCAATGGCAGCCCAGTGACTCTCAGCTCTTCAGCCCCATCCCGCTCAGGAATGCTCTACCACAGAACACCAGGAGTCCCCCCAGAGCCCAGCCGCACCAGACATCCATCAGAAGGATCAAGAGATGACGACTCTGTATTAAGAGATGGAAGCGTGGATTCAGATGCTTCCGAAGATCTTCCAAAAACCCACTCCACCCCTGTCACACCCGCTTCCGGTCCTCGCATAACACAACCTCGTGGTGAAGAGACGCCGGACAGCGGTGTGAAGATGACAAACTTTGCAGAGAGAAAGAAGAAGCTGGTTCCAGAACAGGTACGGCCCAGTGAGCCAGAGGCACCACAAATGACAACGTGGGCCAAGAAATCAGAGGAGAGTCCCAGTAAGAGTCCTGCTCTCAGCACTGAAATGTCAGAGCTAGGGGCCAGGCTGGAGGAGAAGCGGAAGGCCATAGAAGCTCAGAAGAAACGTATTGAAGCCATCTTTGCCAAACACCGGCAACGGCTTGGAAAAAGTGCCTTCCTACAGTTAAAGAAGGAGCAAGAGGATGGAGATGGTGAAGAAGGACATCATGGGGGTGGCAGTGCCACCTCCGTAGAAGACGACCTTAGCCGTTTAGCACTGGAGGAGAAACTGGCACGTTTGGAGAGGGAGGAACAGCAGGAGGAGCAACAGGAGGAACAGTTGAACAAGGGCCCATTAGTAGAAGAAGCGGGGAATGTTAAGCCTTCTGTCAAACAGGACAAGCATGGAGAGAAACAAAAACCTGAAGTAGAAACTCCTGGAGGGAAAGGCACAGCCCCACTGGGTGAATATAACAATGCTGTTTCTAAACTAAGTGCTGCACTCAGTTCTCTTCAAAATGATATGCAGCGCCTCTCAGAGCAGCAGAACCAGCTGATGAAGAAAAAGGCAACTCCTACCAAGCAGGCTTGGGTCATCCCACCCAGCTCCAAACCTTCAACGACTACACCTCGTTTGTCAAGAGAGTCCACTCGTGAACTTTCTTCAGCCACCTCCTCTCCTTCCCCCTCTCGAAAGATTTCAGGTCACACCGGTCCCCCAAAATCGCCTGGAGCCCATCGTAGGGCACAGTCTGCACCTCCGAAGAGCCCCAAAGTGCATCACCACCCTCGACCTGCAGAGCTCAAGACACCCATTTCCACTCGAGTCATAACTCCTCCTCAAAGTGTGGACAACATTCCTCATTTACGAAGAGTGTCTCCATGGCAATGCAGGGATCAGAACTCGTCCTCCTTCAGCATAGGTACACCCAGTCAGAGTGAGTCCCGCTCTGCCTCATCCCTGGCCAGACCAGAGGATAATTTCTCAGACACAGGCTCCAGTGAAGACCAAACCATCTTCAGTATGGACTTAGATGGTGGATCCTCACAGGTTCTGCCCCGAAAGGAGCGTCAGGGTGGTGGCAGCAGCTCAGGAGCTCCTTCTGAGTGCTCTTTTGAGAGTGATATTCCTGTAGCAGCTCTCAACGGAAAGCGTGGTAGTCTTATCGAGATATCATTGTCATCTCTCAAAGCATTAGATGGGGAAGAGGCAGATCAGAGCCAAGATATCTTCTCAGACTCTATGAGCGACCAAACAGAGCCAGAAACAAGGGGTGGAGTTGGATTCTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475:ENSDART00000082715:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGCAGCAGGACGATCAT
R:
GGGACACGTGTCATGGATTGG
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]