RnoINT0028794 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2151461-2153113:+
Coord C1 exon
chr12:2151461-2151530
Coord A exon
chr12:2151531-2151639
Coord C2 exon
chr12:2151640-2153113
Length
109 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCTTCCCTCTGGCCGCCCAGCCG
3' ss Score
4.66
Exon sequences
Seq C1 exon
GCTCCCTGAAGTCATCTCCATCCATGTCTCACATGGAGGCTCTTGGCAAAGCCTGGAACCGTCAGCTTAG
Seq A exon
GTGAGTGTATCATATGGGAGGGACCCTGTGGCCTTGTACCAGGGATTGAGCTGATCAGGGCATGGCAGAGACCTGTCCCAGGGGCTGACCCTTCCCTCTGGCCGCCCAG
Seq C2 exon
CCGTCCCCTCTCCCAGGCTGTGTCGTTCAGCACTCCCTTTGGCCTGGACAGCGATGTGGATGTCGTCATGGGAGATCCTGTCCTGCTCCGCTCCGTCAGTTCAGACAGTCTGGGTCCCCCACGTCCTGCGTTGACATCATCGCGGAATTCTGCCCAGCCACCCCCAGAATCTGGAGACCTACCCACAATTGAGGAGGCCCTGCAGATCATTCACAGCGCCGAGCCCCGCCTGCTCCCTGACGGGGCTGCTGATGGCAGTTTCTACCTCCATTCTCCTGAGGGTCTCTCCAAACCACCACTGGCCTCCCCCTATCCTCCCGAAGGAGCCTCAAAGCCACTGTCTGATGGGCTTAACAAAGCACCCATCTATATATCCCACCCTGAGAACCCTTCAAAACCATCTCCCTGCTCAGCAGGAGAGACACTGAAACCACCGCCCCCGTCTGAGGGGTCCCCGAAAGCTGTGGCTTCATCTCCAGCAGCCAACAACTCGGAAGTGAAGATGACCAGTTTTGCTGAGCGAAAGAAGCAGCTGGTGAAGGCTGAGGCTGAATCGGGAACGGGGTCTCCAACATCCACTCCCGTAGCGCCTGAGGCCTTGAGCTCGGAGATGAGCGAGCTGGGTGCCCGGCTGGAGGAGAAGCGCAGAGCCATCGAGGCTCAGAAGCGACGCATTGAGGCTATCTTTGCCAAGCACAGGCAGAGACTGGGCAAGAGCGCTTTCCTGCAGGTGCAGCCTCGGGAGGCTGCAGGGGAGGCTGAGGAGGAAGCTGAGCTGGGCTCAGTTCCTGGTGGGGAACGGCCAGCAGGTGAAGGCCAGGGTGAGCCATCCTCGAGACCTAAGTCAGTTACCTTCTCTCCAGATCTGGGCCCGATTCCCCCAGAAGGACTGGGGGATTACAACCGAGCAGTCAGTAAGCTGAGTGCTGCTTTGAGCTCTCTGCAGCGGGACATGCAGAGGCTCACAGACCAGCAACAGCGGCTTCTAGCCCCTCCAGAGGCTCCTGGACCTGCCCCACCACCTGCAGCCTGGGTCATTCCTGGACCTGCCACTGGGCCTAAAGCAGCATCCCCCAGCCCTGCCCGTCGCGCCCCAGCTGCCCGACGTAGCCCAGGGCCAGGCCCCAGCCCAACTCCCCGTAGTCCAAAACATGCAAGGCCGGCAGAGCTGAAGCTTGCACCTTTGACAAGGGTACTCACACCACCCCATGATGTAGACAGCCTCCCCCACCTACGCAAGTTTTCACCCAGCCAGGTGCCTGTACAGACTCGATCCTCTATCCTCCTGTCGGAGGGGACACCTCCCGAGGAGCCCACCACCAAGCCTGCCCTCATCGAGATCCCTCTAGCCAGCCTGGGGGAGCCTGCTGCTGAGGAGGAAGGAGATGGGAGCCCCCCTGGGGCTGAGGATTCCTTAGAGGAAGAGGCATCTTCTGAGGGAGAGCCCCGATCGGGGCTTGGATTCTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGGCTCTTGGCAAAG
R:
GTGAATGATCTGCAGGGCCTC
Band lengths:
254-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]