MmuINT0002327 @ mm10
Intron Retention
Gene
ENSMUSG00000044433 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3603432-3605076:+
Coord C1 exon
chr8:3603432-3603501
Coord A exon
chr8:3603502-3603605
Coord C2 exon
chr8:3603606-3605076
Length
104 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCCTCCCTCTGGCCGCCCAGCCG
3' ss Score
4.67
Exon sequences
Seq C1 exon
GCTCCCTGAAGTCCTCTCCATCAATGTCTCACATGGAGGCTCTTGGCAAAGCCTGGAACCGTCAGCTTAG
Seq A exon
GTGAGTGCCTCATCGGGGCCCTGTGGCCTTGGAAGAGGGATTGAGCTGATCAGGGCATGGCAGAGGCCTGTCCCAGGGGCTGACCCCTCCCTCTGGCCGCCCAG
Seq C2 exon
CCGTCCCCTCTCCCAGGCTGTGTCGTTCAGCACTCCCTTTGGCCTGGACAGCGATGTGGATGTCGTCATGGGAGATCCTGTCCTGCTCCGCTCCGTCAGCTCAGACAGTCTGGGTCCTCCACGTCCTGTGTCAACATCATCCCGGAATTCTGCTCAGCCAGCCCCAGAATCTGGAGACCTACCCACGATTGAAGAGGCCCTGCAGATCATTCACAGTGCTGAGCCCCGACTGCTCCCTGATGGGGCTGCTGATGGCAGTTTCTACCTCCATTCTCCTGAGGGTCTCTCCAAACCACCACTCTCCCCCTACCCTCCCGAAGGAGCCTCAAAGCCGCTGTCTGATAGGCTCAACAAGGCGCCTATCTATATATCACACCCTGAGAACCCTTCAAAATCATCTCCCTGCTCAACAGGAGAGATACTGAAACCACCACCCCCATCCGAGGGTTCCCCCAAAGCTGTGGCTTCATCCCCAGCAGCCAACAACTCCGAAGTGAAGATGACCAGTTTTGCTGAACGCAAGAAACAGCTGGTGAAGGCTGAGGCTGAGTCAGGATTGGGGTCTCCAACATCCACCCCCGTAGCACCTGAGGCCTTGAGCTCAGAGATGAGTGAGCTGGGAGCCAGGCTGGAGGAGAAGCGCCGAGCCATAGAGGCACAGAAACGACGCATTGAGGCAATCTTTGCCAAGCATAGGCAGAGGCTGGGCAAGAGCGCTTTCCTGCAGGTGCAGCCTCGGGAGGCTGCAGGGGAGGCCGAGGAGGAAGCTGAGCTGGGCTCAGTTCCTGGTGGGGAACGGCCAGCAGGTGAGGGCCAGGGTGAGCCGTCCTTACGGCACAAGTCAGTTACCTTCTCTCCAGACCTGGGCCCAGTGCCCCCAGAGGGACTTGGGGATTACAATAGAGCAGTCAGTAAGCTGAGTGCCGCTCTGAGCTCTCTGCAGCGGGACATGCAGAGGCTCACAGACCAGCAACAGCGGCTTCTAGCCCCTCCAGAAGCTCCTGGACCTGCCCCACCACCTGCAGCCTGGGTCATTCCTGGACCCGCCACTGGGCCTAAAGCAGCATCCCCCAGCCCTGCCCGTCGTGCCCCAGCTGCCCGACGCAGCCCTGGGCCAGGCCCCAGCCCAACACCCCGTAGTCCAAAACATGCAAGGCCGGCAGAGCTGAAGCTTGCACCTTTGACAAGGGTACTCACACCACCCCATGATGTAGACAGCCTCCCTCACCTACGCAAGTTTTCACCCAGCCAGGTGCCTGTACAGACTCGCTCCTCTATCCTCCTGTCGGAGGGGACACCTCCCGAGGAGCCCACCACCAAGCCTGCCCTCATTGAGATCCCTCTAGCCAGCCTGGGGGAGCCTGCTGCTGATGAGGAAGGAGATGGGAGCCCCCCTGGGGCTGAGGATTCCTTAGAGGAAGAGGCATCTTCTGAGGGAGAGCCCCGATCAGGGCTTGGATTCTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433:ENSMUST00000171962:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=NA C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGGCTCTTGGCAAAG
R:
GTGAATGATCTGCAGGGCCTC
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types